def app_init(app):
app.logger.setLevel(logging.INFO)
# Register duplicates only at runtime
app.logger.info("Initializing app")
dictionary_init(app)
if app.config.get("USE_USER_HARAKIRI", True):
setup_user_harakiri(app)
app_register_blueprints(app)
app_register_duplicate_blueprints(app)
db_init(app)
# exclude es init as it's not used yet
# es_init(app)
cors_init(app)
submission.graphql.make_graph_traversal_dict(app)
app.graphql_schema = submission.graphql.get_schema()
app.schema_file = submission.generate_schema_file(app.graphql_schema,
app.logger)
try:
app.secret_key = app.config["FLASK_SECRET_KEY"]
except KeyError:
app.logger.error(
"Secret key not set in config! Authentication will not work")
async_pool_init(app)
# ARBORIST deprecated, replaced by ARBORIST_URL
arborist_url = os.environ.get("ARBORIST_URL", os.environ.get("ARBORIST"))
if arborist_url:
app.auth = ArboristClient(arborist_base_url=arborist_url)
else:
app.logger.info("Using default Arborist base URL")
app.auth = ArboristClient()
app.node_authz_entity_name = os.environ.get("AUTHZ_ENTITY_NAME", None)
app.node_authz_entity = None
app.subject_entity = None
if app.node_authz_entity_name:
full_module_name = "datamodelutils.models"
mymodule = importlib.import_module(full_module_name)
for i in dir(mymodule):
# TODO look at all the nodes between node_authz_entity_name and project to generalize
if i.lower() == "person":
attribute = getattr(mymodule, i)
app.subject_entity = attribute
if i.lower() == app.node_authz_entity_name.lower():
attribute = getattr(mymodule, i)
app.node_authz_entity = attribute
app.logger.info("Initialization complete.")
def app_init(app):
# Register duplicates only at runtime
app.logger.info("Initializing app")
# explicit options set for compatibility with gdc's api
app.config["AUTH_SUBMISSION_LIST"] = True
app.config["USE_DBGAP"] = False
app.config["IS_GDC"] = False
# default settings
app.config["AUTO_MIGRATE_DATABASE"] = app.config.get(
"AUTO_MIGRATE_DATABASE", True)
app.config["REQUIRE_FILE_INDEX_EXISTS"] = (
# If True, enforce indexd record exists before file node registration
app.config.get("REQUIRE_FILE_INDEX_EXISTS", False))
if app.config.get("USE_USER_HARAKIRI", True):
setup_user_harakiri(app)
app.config["AUTH_NAMESPACE"] = "/" + os.getenv("AUTH_NAMESPACE",
"").strip("/")
app_register_blueprints(app)
db_init(app)
# exclude es init as it's not used yet
# es_init(app)
try:
app.secret_key = app.config["FLASK_SECRET_KEY"]
except KeyError:
app.logger.error(
"Secret key not set in config! Authentication will not work")
# ARBORIST deprecated, replaced by ARBORIST_URL
arborist_url = os.environ.get("ARBORIST_URL", os.environ.get("ARBORIST"))
if arborist_url:
app.auth = ArboristClient(arborist_base_url=arborist_url)
else:
app.logger.info("Using default Arborist base URL")
app.auth = ArboristClient()
def app_init(app):
app.logger.setLevel(logging.INFO)
# Register duplicates only at runtime
app.logger.info('Initializing app')
dictionary_init(app)
if app.config.get("USE_USER_HARAKIRI", True):
setup_user_harakiri(app)
app_register_blueprints(app)
app_register_duplicate_blueprints(app)
db_init(app)
# exclude es init as it's not used yet
# es_init(app)
cors_init(app)
submission.graphql.make_graph_traversal_dict(app)
app.graphql_schema = submission.graphql.get_schema()
app.schema_file = submission.generate_schema_file(app.graphql_schema, app.logger)
try:
app.secret_key = app.config['FLASK_SECRET_KEY']
except KeyError:
app.logger.error(
'Secret key not set in config! Authentication will not work'
)
async_pool_init(app)
# ARBORIST deprecated, replaced by ARBORIST_URL
arborist_url = os.environ.get("ARBORIST_URL", os.environ.get("ARBORIST"))
if arborist_url:
app.auth = ArboristClient(arborist_base_url=arborist_url)
else:
app.logger.info("Using default Arborist base URL")
app.auth = ArboristClient()
app.logger.info('Initialization complete.')