def create_or_find_figure(self,
title=None,
subplots=None,
window_name=None):
"""Create a matplotlib figure window or find one already created"""
import cellprofiler.gui.cpfigure as cpf
# catch any background threads trying to call display functions.
assert not self.__in_background
if title == None:
title = self.__module.module_name
if window_name == None:
window_name = cpf.window_name(self.__module)
if self.__create_new_window:
figure = cpf.CPFigureFrame(self,
title=title,
name=window_name,
subplots=subplots)
else:
figure = cpf.create_or_find(self.__frame,
title=title,
name=window_name,
subplots=subplots)
if not figure in self.__windows_used:
self.__windows_used.append(figure)
return figure
def get_module_figure(self, module, image_set_number, parent=None):
"""Create a CPFigure window or find one already created"""
import cellprofiler.gui.cpfigure as cpf
import cellprofiler.measurements as cpmeas
# catch any background threads trying to call display functions.
assert not self.__in_background
window_name = cpf.window_name(module)
if self.measurements.has_feature(cpmeas.EXPERIMENT,
cpmeas.M_GROUPING_TAGS):
group_number = self.measurements[cpmeas.IMAGE, cpmeas.GROUP_NUMBER,
image_set_number]
group_index = self.measurements[cpmeas.IMAGE, cpmeas.GROUP_INDEX,
image_set_number]
title = "%s #%d, image cycle #%d, group #%d, group index #%d" % (
module.module_name, module.module_num, image_set_number,
group_number, group_index)
else:
title = "%s #%d, image cycle #%d" % (
module.module_name, module.module_num, image_set_number)
if self.__create_new_window:
figure = cpf.CPFigureFrame(parent or self.__frame,
name=window_name,
title=title)
else:
figure = cpf.create_or_find(parent or self.__frame,
name=window_name,
title=title)
if not figure in self.__windows_used:
self.__windows_used.append(figure)
return figure
def __display_matlab_image(self, handles, filename):
image = handles["Image"]
frame = FIG.CPFigureFrame(self.__list_box.GetTopLevelParent(),
title=filename,
subplots=(1, 1))
if image.ndim == 3:
frame.subplot_imshow(0, 0, image, filename)
else:
frame.subplot_imshow_grayscale(0, 0, image, filename)
frame.Refresh()
def __display_image(self, filename):
lip = LoadImagesImageProvider("dummy", "", filename, True)
image = lip.provide_image(None).pixel_data
frame = FIG.CPFigureFrame(self.__list_box.GetTopLevelParent(),
title=filename,
subplots=(1, 1))
if image.ndim == 3:
frame.subplot_imshow(0, 0, image, filename)
else:
frame.subplot_imshow_grayscale(0, 0, image, filename)
frame.Refresh()
def OnInit(self):
wx.InitAllImageHandlers()
self.frame = F.CPFigureFrame(title="Otsu", subplots=(2, 1))
file_menu = self.frame.MenuBar.Menus[0][0]
file_menu.Append(FILE_OPEN, "&Open")
file_menu.AppendRadioItem(M_OTSU, "Otsu")
file_menu.AppendRadioItem(M_ENTROPY, "Entropy")
file_menu.AppendRadioItem(M_OTSU3, "Otsu3")
file_menu.AppendRadioItem(M_ENTROPY3, "Entropy3")
file_menu.AppendRadioItem(M_FAST_OTSU3, "Otsu3 Fast & Messy")
file_menu.AppendCheckItem(M_LOG_TRANSFORM, "Log transform")
wx.EVT_MENU(self.frame, FILE_OPEN, self.on_file_open)
self.SetTopWindow(self.frame)
self.frame.Show()
return 1
def get_module_figure(self, module, image_set_number, parent=None):
"""Create a CPFigure window or find one already created"""
import cellprofiler.gui.cpfigure as cpf
# catch any background threads trying to call display functions.
assert not self.__in_background
window_name = cpf.window_name(module)
title = "%s #%d, image cycle #%d" % (
module.module_name, module.module_num, image_set_number)
if self.__create_new_window:
figure = cpf.CPFigureFrame(parent or self.__frame,
name=window_name,
title=title)
else:
figure = cpf.create_or_find(parent or self.__frame,
name=window_name,
title=title)
if not figure in self.__windows_used:
self.__windows_used.append(figure)
return figure
