def fill_modules():
del pymodules[:]
del badmodules[:]
del datatools[:]
all_modules.clear()
svn_revisions.clear()
def add_module(mod, check_svn):
try:
m = __import__(mod, globals(), locals(), ['__all__'], 0)
cp_module = find_cpmodule(m)
name = cp_module.module_name
except Exception as e:
logger.warning("Could not load %s", mod, exc_info=True)
badmodules.append((mod, e))
return
try:
pymodules.append(m)
if name in all_modules:
logger.warning(
"Multiple definitions of module %s\n\told in %s\n\tnew in %s",
name, sys.modules[all_modules[name].__module__].__file__,
m.__file__)
all_modules[name] = cp_module
check_module(cp_module, name)
# attempt to instantiate
if not hasattr(cp_module, 'do_not_check'):
cp_module()
if hasattr(cp_module, "run_as_data_tool"):
datatools.append(name)
if check_svn and hasattr(m, '__version__'):
match = re.match('^\$Revision: ([0-9]+) \$$', m.__version__)
if match is not None:
svn_revisions[name] = match.groups()[0]
if not hasattr(all_modules[name], "settings"):
# No settings = pure data tool
pure_datatools[name] = all_modules[name]
del all_modules[name]
except Exception as e:
logger.warning("Failed to load %s", name, exc_info=True)
badmodules.append((mod, e))
if name in all_modules:
del all_modules[name]
del pymodules[-1]
for mod in builtin_modules:
add_module('cellprofiler.modules.' + mod, True)
plugin_directory = get_plugin_directory()
if plugin_directory is not None:
old_path = sys.path
sys.path.insert(0, plugin_directory)
try:
for mod in plugin_list():
add_module(mod, False)
finally:
sys.path = old_path
datatools.sort()
if len(badmodules) > 0:
logger.warning("could not load these modules: %s",
",".join([x[0] for x in badmodules]))
def fill_modules():
del pymodules[:]
del badmodules[:]
del datatools[:]
all_modules.clear()
svn_revisions.clear()
def add_module(mod, check_svn):
try:
m = __import__(mod, globals(), locals(), ['__all__'], 0)
cp_module = find_cpmodule(m)
name = cp_module.module_name
except Exception as e:
logger.warning("Could not load %s", mod, exc_info=True)
badmodules.append((mod, e))
return
try:
pymodules.append(m)
if name in all_modules:
logger.warning(
"Multiple definitions of module %s\n\told in %s\n\tnew in %s",
name, sys.modules[all_modules[name].__module__].__file__,
m.__file__)
all_modules[name] = cp_module
check_module(cp_module, name)
# attempt to instantiate
if not hasattr(cp_module, 'do_not_check'):
cp_module()
if hasattr(cp_module, "run_as_data_tool"):
datatools.append(name)
if check_svn and hasattr(m, '__version__'):
match = re.match('^\$Revision: ([0-9]+) \$$', m.__version__)
if match is not None:
svn_revisions[name] = match.groups()[0]
if not hasattr(all_modules[name], "settings"):
# No settings = pure data tool
pure_datatools[name] = all_modules[name]
del all_modules[name]
except Exception as e:
logger.warning("Failed to load %s", name, exc_info=True)
badmodules.append((mod, e))
if name in all_modules:
del all_modules[name]
del pymodules[-1]
for mod in builtin_modules:
add_module('cellprofiler.modules.' + mod, True)
plugin_directory = get_plugin_directory()
if plugin_directory is not None:
old_path = sys.path
sys.path.insert(0, plugin_directory)
try:
for mod in plugin_list():
add_module(mod, False)
finally:
sys.path = old_path
datatools.sort()
if len(badmodules) > 0:
logger.warning("could not load these modules: %s",
",".join([x[0] for x in badmodules]))
except Exception, e:
logger.warning("Failed to load %s", name, exc_info=True)
badmodules.append((mod, e))
if name in all_modules:
del all_modules[name]
del pymodules[-1]
for mod in builtin_modules:
add_module('cellprofiler.modules.' + mod, True)
plugin_directory = get_plugin_directory()
if plugin_directory is not None:
old_path = sys.path
sys.path.insert(0, plugin_directory)
try:
for mod in plugin_list():
add_module(mod, False)
finally:
sys.path = old_path
datatools.sort()
if len(badmodules) > 0:
logger.warning("could not load these modules: %s",
",".join([x[0] for x in badmodules]))
def add_module_for_tst(module_class):
all_modules[module_class.module_name] = module_class
fill_modules()
except Exception, e:
logger.warning("Failed to load %s", name, exc_info=True)
badmodules.append((mod, e))
if name in all_modules:
del all_modules[name]
del pymodules[-1]
for mod in builtin_modules:
add_module("cellprofiler.modules." + mod, True)
plugin_directory = get_plugin_directory()
if plugin_directory is not None:
old_path = sys.path
sys.path.insert(0, plugin_directory)
try:
for mod in plugin_list():
add_module(mod, False)
finally:
sys.path = old_path
datatools.sort()
if len(badmodules) > 0:
logger.warning("could not load these modules: %s", ",".join([x[0] for x in badmodules]))
def add_module_for_tst(module_class):
all_modules[module_class.module_name] = module_class
fill_modules()
