def make_full_filename(self,
file_name,
workspace=None,
image_set_number=None):
"""Convert a file name into an absolute path
We do a few things here:
* apply metadata from an image set to the file name if an
image set is specified
* change the relative path into an absolute one using the "." and "&"
convention
* Create any directories along the path
"""
if image_set_number is not None and workspace is not None:
file_name = workspace.measurements.apply_metadata(
file_name, image_set_number)
measurements = None if workspace is None else workspace.measurements
path_name = self.directory.get_absolute_path(measurements,
image_set_number)
file_name = os.path.join(path_name, file_name)
path, file = os.path.split(file_name)
if not os.path.isdir(path):
os.makedirs(path)
if self.prepend_output_filename.value:
file = os.path.splitext(get_output_file_name())[0] + '_' + file
return os.path.join(path, file)
def on_add(self, event):
for i in range(self.file_chooser.ItemCount):
if self.file_chooser.IsSelected(i):
path = os.path.join(self.directory_picker.Path,
self.file_chooser.GetItemText(i))
index = self.pipeline_list_view.InsertStringItem(
sys.maxint, path)
self.pipeline_list_view.SetStringItem(
index, P_INPUT_DIRECTORY_COLUMN,
cpprefs.get_default_image_directory())
self.pipeline_list_view.SetStringItem(
index, P_OUTPUT_DIRECTORY_COLUMN,
cpprefs.get_default_output_directory())
self.pipeline_list_view.SetStringItem(
index, P_OUTPUT_FILE_COLUMN,
cpprefs.get_output_file_name())
self.pipeline_list_view.SetItemColumnImage(
index, P_REMOVE_BUTTON_COLUMN, self.delete_bmp_idx)
self.file_chooser.Select(i, False)
self.pipeline_list_view.SetColumnWidth(P_FILENAME_COLUMN,
wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_INPUT_DIRECTORY_COLUMN,
wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_OUTPUT_DIRECTORY_COLUMN,
wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_OUTPUT_FILE_COLUMN,
wx.LIST_AUTOSIZE)
def on_add(self, event):
for i in range(self.file_chooser.ItemCount):
if self.file_chooser.IsSelected(i):
path = os.path.join(
self.directory_picker.Path,
self.file_chooser.GetItemText(i))
index = self.pipeline_list_view.InsertStringItem(
sys.maxint, path)
self.pipeline_list_view.SetStringItem(
index, P_INPUT_DIRECTORY_COLUMN,
cpprefs.get_default_image_directory())
self.pipeline_list_view.SetStringItem(
index, P_OUTPUT_DIRECTORY_COLUMN,
cpprefs.get_default_output_directory())
self.pipeline_list_view.SetStringItem(
index, P_OUTPUT_FILE_COLUMN,
cpprefs.get_output_file_name())
self.pipeline_list_view.SetItemColumnImage(
index, P_REMOVE_BUTTON_COLUMN, self.delete_bmp_idx)
self.file_chooser.Select(i, False)
self.pipeline_list_view.SetColumnWidth(P_FILENAME_COLUMN, wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_INPUT_DIRECTORY_COLUMN, wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_OUTPUT_DIRECTORY_COLUMN, wx.LIST_AUTOSIZE)
self.pipeline_list_view.SetColumnWidth(P_OUTPUT_FILE_COLUMN, wx.LIST_AUTOSIZE)
def make_full_filename(self, file_name,
workspace = None, image_set_number = None):
"""Convert a file name into an absolute path
We do a few things here:
* apply metadata from an image set to the file name if an
image set is specified
* change the relative path into an absolute one using the "." and "&"
convention
* Create any directories along the path
"""
if image_set_number is not None and workspace is not None:
file_name = workspace.measurements.apply_metadata(file_name,
image_set_number)
measurements = None if workspace is None else workspace.measurements
path_name = self.directory.get_absolute_path(measurements,
image_set_number)
file_name = os.path.join(path_name, file_name)
path, file = os.path.split(file_name)
if not os.path.isdir(path):
os.makedirs(path)
if self.prepend_output_filename.value:
file = os.path.splitext(get_output_file_name())[0] + '_' + file
return os.path.join(path,file)
def __on_preferences_output_filename_event(self, event):
if self.__output_filename_edit_box.Value != cpprefs.get_output_file_name(
):
self.__output_filename_edit_box.Value = cpprefs.get_output_file_name(
)
def __make_odds_and_ends_panel(self):
panel = self.__odds_and_ends_panel
output_filename_text = wx.StaticText(panel, -1, 'Output Filename:')
output_filename_edit_box = wx.TextCtrl(
panel, value=cpprefs.get_output_file_name())
self.__output_filename_edit_box = output_filename_edit_box
allow_output_filename_overwrite_check_box = \
wx.CheckBox(panel, label = "Allow overwrite?")
allow_output_filename_overwrite_check_box.Value = \
cpprefs.get_allow_output_file_overwrite()
write_measurements_combo_box = wx.Choice(
panel,
choices=[
WRITE_HDF_FILE_TEXT, WRITE_MAT_FILE_TEXT,
DO_NOT_WRITE_MEASUREMENTS_TEXT
])
# set measurements mode, then fake an event to update output
# filename and which controls are shown.
measurements_mode_idx = [cpprefs.WRITE_HDF5, True,
False].index(cpprefs.get_write_MAT_files())
write_measurements_combo_box.SetSelection(measurements_mode_idx)
output_filename_help_button = wx.Button(panel,
label='?',
style=wx.BU_EXACTFIT)
output_file_format_text = wx.StaticText(panel,
label="Output file format:")
cpprefs.add_output_file_name_listener(
self.__on_preferences_output_filename_event)
cpprefs.add_image_directory_listener(
self.__on_preferences_image_directory_event)
cpprefs.add_output_directory_listener(
self.__on_preferences_output_directory_event)
self.__hold_a_reference_to_progress_callback = self.progress_callback
cpprefs.add_progress_callback(
self.__hold_a_reference_to_progress_callback)
def on_output_filename_changed(event):
cpprefs.set_output_file_name(output_filename_edit_box.Value)
def on_allow_checkbox(event):
cpprefs.set_allow_output_file_overwrite(
allow_output_filename_overwrite_check_box.Value)
def on_write_MAT_files_combo_box(event):
#
# Update the state to reflect the new measurement choice
#
sel = write_measurements_combo_box.GetStringSelection()
output_filename = output_filename_edit_box.Value
if sel == WRITE_HDF_FILE_TEXT:
cpprefs.set_write_MAT_files(cpprefs.WRITE_HDF5)
if output_filename.lower().endswith('.mat'):
output_filename = output_filename[:-4] + u".h5"
elif sel == WRITE_MAT_FILE_TEXT:
cpprefs.set_write_MAT_files(True)
if output_filename.lower().endswith('.h5'):
output_filename = output_filename[:-3] + u".mat"
else:
cpprefs.set_write_MAT_files(False)
if output_filename != output_filename_edit_box.Value:
output_filename_edit_box.Value = output_filename
cpprefs.set_output_file_name(output_filename_edit_box.Value)
#
# Reconstruct the sizers depending on whether we have one or two rows
#
if sel == DO_NOT_WRITE_MEASUREMENTS_TEXT:
show = False
output_sizer = wx.BoxSizer(wx.HORIZONTAL)
output_sizer.Add(output_filename_help_button, 0, wx.EXPAND)
output_sizer.Add(output_file_format_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(write_measurements_combo_box, 0,
wx.ALIGN_LEFT)
else:
show = True
output_sizer = wx.FlexGridSizer(2, 3, 2, 2)
output_sizer.SetFlexibleDirection(wx.HORIZONTAL)
output_sizer.AddGrowableCol(2)
output_filename_edit_box_sizer = wx.BoxSizer(wx.HORIZONTAL)
output_filename_edit_box_sizer.Add(output_filename_edit_box, 1,
wx.EXPAND)
output_filename_edit_box_sizer.AddSpacer(2)
output_filename_edit_box_sizer.Add(
allow_output_filename_overwrite_check_box, 0,
wx.ALIGN_CENTER)
output_sizer.Add(output_filename_help_button, 0, wx.EXPAND)
output_sizer.Add(output_filename_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(output_filename_edit_box_sizer, 1, wx.EXPAND)
output_sizer.Add(wx.BoxSizer(), 0, wx.EXPAND)
output_sizer.Add(output_file_format_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(write_measurements_combo_box, 0,
wx.ALIGN_LEFT)
panel.SetSizer(output_sizer)
for ctrl in (output_filename_text, output_filename_edit_box,
allow_output_filename_overwrite_check_box):
ctrl.Show(show)
panel.Parent.Layout()
panel.Layout()
write_measurements_combo_box.Bind(wx.EVT_CHOICE,
on_write_MAT_files_combo_box)
allow_output_filename_overwrite_check_box.Bind(wx.EVT_CHECKBOX,
on_allow_checkbox)
output_filename_help_button.Bind(
wx.EVT_BUTTON,
lambda event: self.__on_help(event, USING_THE_OUTPUT_FILE_HELP))
output_filename_edit_box.Bind(wx.EVT_TEXT, on_output_filename_changed)
panel.Bind(wx.EVT_WINDOW_DESTROY, self.__on_destroy, panel)
on_write_MAT_files_combo_box(None)
def __on_preferences_output_filename_event(self,event):
if self.__output_filename_edit_box.Value != cpprefs.get_output_file_name():
self.__output_filename_edit_box.Value = cpprefs.get_output_file_name()
def __make_odds_and_ends_panel(self):
panel = self.__odds_and_ends_panel
output_filename_text = wx.StaticText(panel,-1,'Output Filename:')
output_filename_edit_box = wx.TextCtrl(
panel, value=cpprefs.get_output_file_name())
self.__output_filename_edit_box = output_filename_edit_box
allow_output_filename_overwrite_check_box = \
wx.CheckBox(panel, label = "Allow overwrite?")
allow_output_filename_overwrite_check_box.Value = \
cpprefs.get_allow_output_file_overwrite()
write_measurements_combo_box = wx.Choice(
panel, choices =
[WRITE_HDF_FILE_TEXT, WRITE_MAT_FILE_TEXT,
DO_NOT_WRITE_MEASUREMENTS_TEXT])
# set measurements mode, then fake an event to update output
# filename and which controls are shown.
measurements_mode_idx = [cpprefs.WRITE_HDF5, True, False].index(
cpprefs.get_write_MAT_files())
write_measurements_combo_box.SetSelection(measurements_mode_idx)
output_filename_help_button = wx.Button(
panel, label = '?', style=wx.BU_EXACTFIT)
output_file_format_text = wx.StaticText(
panel, label = "Output file format:")
cpprefs.add_output_file_name_listener(
self.__on_preferences_output_filename_event)
cpprefs.add_image_directory_listener(
self.__on_preferences_image_directory_event)
cpprefs.add_output_directory_listener(
self.__on_preferences_output_directory_event)
self.__hold_a_reference_to_progress_callback = self.progress_callback
cpprefs.add_progress_callback(
self.__hold_a_reference_to_progress_callback)
def on_output_filename_changed(event):
cpprefs.set_output_file_name(output_filename_edit_box.Value)
def on_allow_checkbox(event):
cpprefs.set_allow_output_file_overwrite(
allow_output_filename_overwrite_check_box.Value)
def on_write_MAT_files_combo_box(event):
#
# Update the state to reflect the new measurement choice
#
sel = write_measurements_combo_box.GetStringSelection()
output_filename = output_filename_edit_box.Value
if sel == WRITE_HDF_FILE_TEXT:
cpprefs.set_write_MAT_files(cpprefs.WRITE_HDF5)
if output_filename.lower().endswith('.mat'):
output_filename = output_filename[:-4] + u".h5"
elif sel == WRITE_MAT_FILE_TEXT:
cpprefs.set_write_MAT_files(True)
if output_filename.lower().endswith('.h5'):
output_filename = output_filename[:-3] + u".mat"
else:
cpprefs.set_write_MAT_files(False)
if output_filename != output_filename_edit_box.Value:
output_filename_edit_box.Value = output_filename
cpprefs.set_output_file_name(
output_filename_edit_box.Value)
#
# Reconstruct the sizers depending on whether we have one or two rows
#
if sel == DO_NOT_WRITE_MEASUREMENTS_TEXT:
show = False
output_sizer = wx.BoxSizer(wx.HORIZONTAL)
output_sizer.Add(output_filename_help_button, 0, wx.EXPAND)
output_sizer.Add(output_file_format_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(write_measurements_combo_box, 0, wx.ALIGN_LEFT)
else:
show = True
output_sizer = wx.FlexGridSizer(2, 3, 2, 2)
output_sizer.SetFlexibleDirection(wx.HORIZONTAL)
output_sizer.AddGrowableCol(2)
output_filename_edit_box_sizer = wx.BoxSizer(wx.HORIZONTAL)
output_filename_edit_box_sizer.Add(
output_filename_edit_box, 1 , wx.EXPAND)
output_filename_edit_box_sizer.AddSpacer(2)
output_filename_edit_box_sizer.Add(
allow_output_filename_overwrite_check_box, 0,
wx.ALIGN_CENTER)
output_sizer.Add(output_filename_help_button, 0, wx.EXPAND)
output_sizer.Add(output_filename_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(output_filename_edit_box_sizer, 1, wx.EXPAND)
output_sizer.Add(wx.BoxSizer(), 0, wx.EXPAND)
output_sizer.Add(output_file_format_text, 0, wx.ALIGN_RIGHT)
output_sizer.Add(write_measurements_combo_box, 0, wx.ALIGN_LEFT)
panel.SetSizer(output_sizer)
for ctrl in (output_filename_text,
output_filename_edit_box,
allow_output_filename_overwrite_check_box):
ctrl.Show(show)
panel.Parent.Layout()
panel.Layout()
write_measurements_combo_box.Bind(
wx.EVT_CHOICE, on_write_MAT_files_combo_box)
allow_output_filename_overwrite_check_box.Bind(
wx.EVT_CHECKBOX, on_allow_checkbox)
output_filename_help_button.Bind(
wx.EVT_BUTTON,
lambda event: self.__on_help(event, USING_THE_OUTPUT_FILE_HELP))
output_filename_edit_box.Bind(wx.EVT_TEXT, on_output_filename_changed)
panel.Bind(wx.EVT_WINDOW_DESTROY, self.__on_destroy, panel)
on_write_MAT_files_combo_box(None)
def __make_odds_and_ends_panel(self):
panel = self.__odds_and_ends_panel
self.__output_filename_text = wx.StaticText(panel,-1,'Output Filename:')
self.__output_filename_edit_box = wx.TextCtrl(panel, -1, cpprefs.get_output_file_name())
self.__allow_output_filename_overwrite_check_box = \
wx.CheckBox(panel, label = "Allow overwrite?")
self.__allow_output_filename_overwrite_check_box.Value = \
cpprefs.get_allow_output_file_overwrite()
def on_allow_checkbox(event):
cpprefs.set_allow_output_file_overwrite(
self.__allow_output_filename_overwrite_check_box.Value)
self.__allow_output_filename_overwrite_check_box.Bind(
wx.EVT_CHECKBOX, on_allow_checkbox)
self.__write_measurements_combo_box = \
wx.Choice(panel, choices =
[WRITE_HDF_FILE, WRITE_MAT_FILE,
DO_NOT_WRITE_MEASUREMENTS])
def on_write_MAT_files_combo_box(event):
sel = self.__write_measurements_combo_box.GetStringSelection()
output_filename = self.__output_filename_edit_box.Value
if sel == WRITE_HDF_FILE:
cpprefs.set_write_MAT_files(cpprefs.WRITE_HDF5)
if output_filename.lower().endswith('.mat'):
output_filename = output_filename[:-4] + u".h5"
elif sel == WRITE_MAT_FILE:
cpprefs.set_write_MAT_files(True)
if output_filename.lower().endswith('.h5'):
output_filename = output_filename[:-3] + u".mat"
else:
cpprefs.set_write_MAT_files(False)
if output_filename != self.__output_filename_edit_box.Value:
self.__output_filename_edit_box.Value = output_filename
cpprefs.set_output_file_name(self.__output_filename_edit_box.Value)
self.__show_output_filename(sel != DO_NOT_WRITE_MEASUREMENTS)
panel.Layout()
panel.Refresh()
# set measurements mode, then fake an event to update output
# filename and which controls are shown.
measurements_mode_idx = [cpprefs.WRITE_HDF5, True, False].index(cpprefs.get_write_MAT_files())
self.__write_measurements_combo_box.SetSelection(measurements_mode_idx)
on_write_MAT_files_combo_box(None)
self.__write_measurements_combo_box.Bind(
wx.EVT_CHOICE, on_write_MAT_files_combo_box)
output_filename_help_button = wx.Button(panel,-1,'?', (0,0), (30,-1))
if not cpdistributed.run_distributed():
self.__analyze_images_button = wx.Button(panel, -1, ANALYZE_IMAGES)
else:
self.__analyze_images_button = wx.Button(panel, -1, START_WORK_SERVER)
self.__stop_analysis_button = wx.Button(panel,-1,'Stop analysis')
sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.AddMany([(output_filename_help_button,0,wx.ALIGN_CENTER|wx.ALL,1),
(self.__output_filename_text,0,wx.ALIGN_CENTER,1),
(self.__output_filename_edit_box,5,wx.ALL,1),
(self.__allow_output_filename_overwrite_check_box, 0, wx.ALIGN_CENTER | wx.ALL, 1),
((1, 1), 1),
(wx.StaticText(panel, label = "Measurements file format:"), 0, wx.ALIGN_CENTER | wx.ALL, 1),
(self.__write_measurements_combo_box, 0, wx.ALIGN_CENTER | wx.ALL, 1),
(self.__analyze_images_button,0,wx.ALL,1),
(self.__stop_analysis_button, 0, wx.ALL,1)])
sizer.Hide(self.__stop_analysis_button)
panel.SetSizer(sizer)
panel.Bind(wx.EVT_BUTTON,
lambda event: self.__on_help(event, OUTPUT_FILENAME_HELP),
output_filename_help_button)
panel.Bind(wx.EVT_TEXT, self.__on_output_filename_changed, self.__output_filename_edit_box)
cpprefs.add_output_file_name_listener(self.__on_preferences_output_filename_event)
cpprefs.add_image_directory_listener(self.__on_preferences_image_directory_event)
cpprefs.add_output_directory_listener(self.__on_preferences_output_directory_event)
cpprefs.add_run_distributed_listener(self.__on_preferences_run_distributed_event)
panel.Bind(wx.EVT_WINDOW_DESTROY, self.__on_destroy, panel)
