def __init__(self, family_handle, next_filter=None, name=None,
genotyped_families=True, min_children=0):
'''Initialize a filter that uses the filter processor to process SNP+trio combinations.
Use single_family in debugging to process only the first encountered family.'''
Filter.__init__(self, name=name, next_filter=next_filter)
self.family_handle = family_handle
self.genotyped_families = genotyped_families
self.min_children = min_children
def __init__(self,
next_filter=None,
name=None,
single_sample=None,
max_samples=np.inf,
debug=False):
Filter.__init__(self, name=name, next_filter=next_filter)
# Debugging options
self.single_sample = single_sample
self.debug = debug
self.max_samples = max_samples
def __init__(self,
family_handle,
next_filter=None,
name=None,
genotyped_families=True,
min_children=0):
'''Initialize a filter that uses the filter processor to process SNP+trio combinations.
Use single_family in debugging to process only the first encountered family.'''
Filter.__init__(self, name=name, next_filter=next_filter)
self.family_handle = family_handle
self.genotyped_families = genotyped_families
self.min_children = min_children
def __init__(self, delegate, next_filter=None):
'''Initialize a decorator of the delegate Filter. fmt specifies the printout format string that
accepts one string argument for the filter's name.'''
Filter.__init__(self, next_filter=next_filter, name=delegate.name)
self.delegate = delegate
def __init__(self, increment, next_filter=None):
'''Initialize a filter.'''
Filter.__init__(self, next_filter)
self.increment = increment
def __init__(self, next_filter=None, name=None, single_sample=None, max_samples=np.inf, debug=False):
Filter.__init__(self, name=name, next_filter=next_filter)
# Debugging options
self.single_sample = single_sample
self.debug = debug
self.max_samples = max_samples
def __init__(self, delegate, next_filter=None):
'''Initialize a decorator of the delegate Filter. fmt specifies the printout format string that
accepts one string argument for the filter's name.'''
Filter.__init__(self, next_filter=next_filter, name=delegate.name)
self.delegate = delegate
def __init__(self, increment, next_filter=None):
'''Initialize a filter.'''
Filter.__init__(self, next_filter)
self.increment = increment
