def testChecklistEvalExcel(self):
"""
Test checklist evaluation with generated Minim file from Excel source
"""
self.setupConfig()
rodir = self.createTestRo(testbase, "testro", "RO for testMkMinim", "ro-testMkMinim")
self.populateTestRo(testbase, rodir)
self.annotateResource(testbase, rodir, "", "FileAnnotations.ttl")
rouri = ro_manifest.getRoUri(rodir)
# Create minim graph from CSV file
gridname = "TestMkMinim.xls"
griduri = ro_manifest.getComponentUri(rodir, gridname)
gridxls = os.path.join(rodir, gridname)
gridbase = "http://example.org/base/"
grid = GridExcel(gridxls, baseuri=gridbase)
(status, minimgr) = mkminim.mkminim(grid, baseuri=grid.resolveUri(""))
self.assertEquals(status, 0)
# Write Minim
minimname = "TestMkMinim_minim.ttl"
with open(rodir + "/" + minimname, "w") as minimfile:
minimgr.serialize(minimfile, format="turtle")
# Evaluate checklist
minimuri = ro_manifest.getComponentUri(rodir, minimname)
minimpurpose = "test1"
args = ["ro", "evaluate", "checklist", "-a", "-d", rodir + "/", minimname, minimpurpose, "."]
self.outstr.seek(0)
with StdoutContext.SwitchStdout(self.outstr):
status = ro.runCommand(
os.path.join(testbase, TestConfig.ro_test_config.CONFIGDIR),
os.path.join(testbase, TestConfig.ro_test_config.ROBASEDIR),
args,
)
outtxt = self.outstr.getvalue()
assert status == 0, "Status %d, outtxt: %s" % (status, outtxt)
log.debug("status %d, outtxt: %s" % (status, outtxt))
# Check response returned
# filelist = [ unicode(ro_manifest.getComponentUri(rodir, f))
# for f in ["File1.txt", "File2.txt", "File3.txt"] ]
filelist = ValueList(
[str(ro_manifest.getComponentUri(rodir, f)) for f in ["File1.txt", "File2.txt", "File3.txt"]]
)
expect = [
"Research Object file://%s/:" % (rodir),
"Fully complete for test1 of resource .",
"Satisfied requirements:",
" At least 3 file as part values are present",
" At most 3 file as part values are present",
" All part resource files %s are aggregated in RO" % (filelist),
" All file as part resources are accessible (live)",
" Python 2.7.x present",
" Files as part are partOf some indicated whole",
" File exists as a part",
"Research object URI: %s" % (rouri),
"Minimum information URI: %s" % (minimuri),
]
self.outstr.seek(0)
for line in self.outstr:
self.assertIn(str(line)[:-1], expect)
self.deleteTestRo(rodir)
return
def testMkMinim(self):
self.setupConfig()
rodir = self.createTestRo(testbase, "testro", "RO for testMkMinim", "ro-testMkMinim")
rouri = ro_manifest.getRoUri(rodir)
# Create minim graph from CSV file
# NOTE: a base URI may be specoified when decoding the grid or when constructing the minim
# graph. The Minim graph uses its own relative references, so for consistency it may
# be necessary to pass the grid base URI to mkminim. The code below does this.
gridname = "TestMkMinim.csv"
griduri = ro_manifest.getComponentUri(rodir, gridname)
gridcsv = os.path.join(rodir, gridname)
gridbase = "http://example.org/base/"
with open(gridcsv, "rU") as gridfile:
grid = GridCSV(gridfile, baseuri=gridbase, dialect=csv.excel)
(status, minimgr) = mkminim.mkminim(grid, baseuri=grid.resolveUri(""))
self.assertEquals(status, 0)
# Read expected graph
graphname = os.path.join(rodir, "TestMkMinim.ttl")
expectgr = rdflib.Graph()
with open(graphname) as expectfile:
expectgr.parse(file=expectfile, publicID=gridbase, format="turtle")
# Check content of minim graph
###minimgr.serialize(sys.stdout, format="turtle")
self.checkTargetGraph(minimgr.graph(), expectgr, msg="Not found in constructed minim graph")
self.deleteTestRo(rodir)
return
