def testBinMarkerSets(self):
"""Verify bin marker set data structure."""
bms = BinMarkerSets(0, BinMarkerSets.TAXONOMIC_MARKER_SET)
ms1 = MarkerSet(1, "k__Bacteria", 100, [set(["a", "b"]), set(["c"])])
bms.addMarkerSet(ms1)
ms2 = MarkerSet(2, "k__Bacteria", 100, [set(["d", "e"]), set(["f"])])
bms.addMarkerSet(ms2)
self.assertEqual(bms.getMarkerGenes(), set(["a", "b", "c", "d", "e", "f"]))
self.assertEqual(bms.mostSpecificMarkerSet(), ms1)
self.assertEqual(bms.selectedMarkerSet(), ms1)
def testBinMarkerSets(self):
"""Verify bin marker set data structure."""
bms = BinMarkerSets(0, BinMarkerSets.TAXONOMIC_MARKER_SET)
ms1 = MarkerSet(1, 'k__Bacteria', 100, [set(['a', 'b']), set(['c'])])
bms.addMarkerSet(ms1)
ms2 = MarkerSet(2, 'k__Bacteria', 100, [set(['d', 'e']), set(['f'])])
bms.addMarkerSet(ms2)
self.assertEqual(bms.getMarkerGenes(), set(['a', 'b', 'c', 'd', 'e', 'f']))
self.assertEqual(bms.mostSpecificMarkerSet(), ms1)
self.assertEqual(bms.selectedMarkerSet(), ms1)
def testBinMarkerSets(self):
"""Verify bin marker set data structure."""
bms = BinMarkerSets(0, BinMarkerSets.TAXONOMIC_MARKER_SET)
ms1 = MarkerSet(1, 'k__Bacteria', 100, [set(['a', 'b']), set(['c'])])
bms.addMarkerSet(ms1)
ms2 = MarkerSet(2, 'k__Bacteria', 100, [set(['d', 'e']), set(['f'])])
bms.addMarkerSet(ms2)
self.assertEqual(bms.getMarkerGenes(),
set(['a', 'b', 'c', 'd', 'e', 'f']))
self.assertEqual(bms.mostSpecificMarkerSet(), ms1)
self.assertEqual(bms.selectedMarkerSet(), ms1)
