def slow_threshold_search(results, fps, threshold, query_start, query_end,
target_start, target_end):
N = len(fps)
query_end = min(N, query_end)
target_end = min(N, target_end)
for row in range(query_start, query_end):
row_fp = fps[row][1]
for col in range(max(row + 1, target_start), target_end):
col_fp = fps[col][1]
score = bitops.byte_tanimoto(row_fp, col_fp)
if score >= threshold:
if row != col:
#print row, col, "X"
results[row].append((col, score))
def slow_counts(counts, fps, threshold, query_start, query_end, target_start,
target_end):
N = len(fps)
query_end = min(N, query_end)
target_end = min(N, target_end)
for row in range(query_start, query_end):
row_fp = fps[row][1]
for col in range(max(row + 1, target_start), target_end):
col_fp = fps[col][1]
if bitops.byte_tanimoto(row_fp, col_fp) >= threshold:
if row != col:
#print row, col, "X"
counts[row] += 1
counts[col] += 1
def slow_threshold_search(results, fps, threshold,
query_start, query_end,
target_start, target_end):
N = len(fps)
query_end = min(N, query_end)
target_end = min(N, target_end)
for row in range(query_start, query_end):
row_fp = fps[row][1]
for col in range(max(row+1, target_start), target_end):
col_fp = fps[col][1]
score = bitops.byte_tanimoto(row_fp, col_fp)
if score >= threshold:
if row != col:
#print row, col, "X"
results[row].append((col, score))
def slow_counts(counts, fps, threshold,
query_start, query_end,
target_start, target_end):
N = len(fps)
query_end = min(N, query_end)
target_end = min(N, target_end)
for row in range(query_start, query_end):
row_fp = fps[row][1]
for col in range(max(row+1, target_start), target_end):
col_fp = fps[col][1]
if bitops.byte_tanimoto(row_fp, col_fp) >= threshold:
if row != col:
#print row, col, "X"
counts[row] += 1
counts[col] += 1
