def clean(self, session):
""" Delete expired data objects. """
now = time.time()
now = pyValToIcat(now)[0]
matches = self._queryMetadata(session, 'expires', '<', now)
for m in matches:
self.delete_data(session, m)
return None
def commit_metadata(self, session):
mymd = self.get_metadataTypes(session)
# need to delete values first
umd = self.coll.getUserMetadata()
umdHash = {}
for u in umd:
umdHash[u[0]] = u[1:]
for md in mymd:
try:
self.coll.rmUserMetadata(md, umdHash[md][0])
except KeyError:
# not been set yet
pass
val, un = pyValToIcat(getattr(self, md))
self.coll.addUserMetadata(md, val, un)
def store_metadata(self, session, id, mType, value):
""" Store value for mType metadata against id. """
if (self.idNormalizer is not None):
id = self.idNormalizer.process_string(session, id)
elif type(id) == unicode:
id = id.encode('utf-8')
else:
id = str(id)
self._open(session)
upwards = 0
if id.find('/') > -1 and self.allowStoreSubDirs:
idp = id.split('/')
id = idp.pop() # file is final part
while idp:
dn = idp.pop(0)
if not dn in self.coll.getSubCollections():
for x in range(upwards):
self.coll.upCollection()
raise ObjectDoesNotExistException(id)
self.coll.openCollection(dn)
upwards += 1
else:
id = id.replace('/', '--')
collPath = self.coll.getCollName()
# this is much more efficient than getting the file as it's simply
# interacting with iCAT
irods.addFileUserMetadata(self.cxn,
'{0}/{1}'.format(collPath, id),
mType, *pyValToIcat(value)
)
# if self.resource:
# f = self.coll.open(id, rescName=self.resource)
# else:
# f = self.coll.open(id)
#
# if not f:
# for x in range(upwards):
# self.coll.upCollection()
# return None
#
# f.addUserMetadata(mType, *pyValToIcat(value))
# f.close()
for x in range(upwards):
self.coll.upCollection()
def _queryMetadata(self, session, attName, opName, attValue):
genQueryInp = irods.genQueryInp_t()
# select what we want to fetch
i1 = irods.inxIvalPair_t()
i1.addInxIval(irods.COL_DATA_NAME, 0)
genQueryInp.setSelectInp(i1)
attValue, units = pyValToIcat(attValue)
i2 = irods.inxValPair_t()
i2.addInxVal(irods.COL_META_DATA_ATTR_NAME, "='%s'" % attName)
i2.addInxVal(irods.COL_META_DATA_ATTR_VALUE,
"%s '%s'" % (opName, attValue))
self._open(session)
collName = self.coll.getCollName()
i2.addInxVal(irods.COL_COLL_NAME, "= '%s'" % collName)
genQueryInp.setSqlCondInp(i2)
# configure paging
genQueryInp.setMaxRows(1000)
genQueryInp.setContinueInx(0)
matches = []
# do query
genQueryOut, status = irods.rcGenQuery(self.cxn, genQueryInp)
if status == irods_error.CAT_NO_ROWS_FOUND:
return []
elif status == 0:
sqlResults = genQueryOut.getSqlResult()
matches = sqlResults[0].getValues()
while status == 0 and genQueryOut.getContinueInx() > 0:
genQueryInp.setContinueInx(genQueryOut.getContinueInx())
genQueryOut, status = irods.rcGenQuery(self.cxn, genQueryInp)
sqlResults = genQueryOut.getSqlResult()
matches.extend(sqlResults[0].getValues())
return matches
def _queryMetadata(self, session, attName, opName, attValue):
genQueryInp = irods.genQueryInp_t()
# select what we want to fetch
i1 = irods.inxIvalPair_t()
i1.addInxIval(irods.COL_DATA_NAME, 0)
genQueryInp.setSelectInp(i1)
attValue, units = pyValToIcat(attValue)
i2 = irods.inxValPair_t()
i2.addInxVal(irods.COL_META_DATA_ATTR_NAME, "='%s'" % attName)
i2.addInxVal(irods.COL_META_DATA_ATTR_VALUE, "%s '%s'" % (opName, attValue))
self._open(session)
collName = self.coll.getCollName()
i2.addInxVal(irods.COL_COLL_NAME, "= '%s'" % collName)
genQueryInp.setSqlCondInp(i2)
# configure paging
genQueryInp.setMaxRows(1000)
genQueryInp.setContinueInx(0)
matches = []
# do query
genQueryOut, status = irods.rcGenQuery(self.cxn, genQueryInp)
if status == irods_error.CAT_NO_ROWS_FOUND:
return []
elif status == 0:
sqlResults = genQueryOut.getSqlResult()
matches = sqlResults[0].getValues()
while status == 0 and genQueryOut.getContinueInx() > 0:
genQueryInp.setContinueInx(genQueryOut.getContinueInx())
genQueryOut, status = irods.rcGenQuery(self.cxn, genQueryInp)
sqlResults = genQueryOut.getSqlResult()
matches.extend(sqlResults[0].getValues())
return matches