def test_permissions_revoke_all_iam_permissions(clean_db, monkeypatch):
"""
Smoke test that Permissions.revoke_all_iam_permissions calls revoke_download_access the right arguments.
"""
gcloud_client = mock_gcloud_client(monkeypatch)
user = Users(email="*****@*****.**")
user.insert()
trial = TrialMetadata(trial_id=TRIAL_ID, metadata_json=METADATA)
trial.insert()
upload_types = ["wes_bam", "ihc", "rna_fastq", "plasma"]
for upload_type in upload_types:
Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type=upload_type,
granted_by_user=user.id,
).insert()
Permissions.revoke_all_iam_permissions()
gcloud_client.revoke_download_access.assert_has_calls(
[call(user.email, trial.trial_id, upload_type) for upload_type in upload_types]
)
# not called on admins or nci biobank users
gcloud_client.revoke_download_access.reset_mock()
for role in [CIDCRole.ADMIN.value, CIDCRole.NCI_BIOBANK_USER.value]:
user.role = role
user.update()
Permissions.revoke_all_iam_permissions()
gcloud_client.revoke_download_access.assert_not_called()
def test_permissions_delete(clean_db, monkeypatch, caplog):
gcloud_client = mock_gcloud_client(monkeypatch)
user = Users(email="*****@*****.**")
user.insert()
trial = TrialMetadata(trial_id=TRIAL_ID, metadata_json=METADATA)
trial.insert()
perm = Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type="wes_bam",
granted_by_user=user.id,
)
perm.insert()
# Deleting a record by a user doesn't exist leads to an error
gcloud_client.reset_mocks()
with pytest.raises(NoResultFound, match="no user with id"):
perm.delete(deleted_by=999999)
# Deletion of an existing permission leads to no error
gcloud_client.reset_mocks()
with caplog.at_level(logging.DEBUG):
perm.delete(deleted_by=user.id)
gcloud_client.revoke_download_access.assert_called_once()
gcloud_client.grant_download_access.assert_not_called()
assert any(
log_record.message.strip()
== f"admin-action: {user.email} removed from {user.email} the permission wes_bam on {trial.trial_id}"
for log_record in caplog.records
)
# Deleting an already-deleted record is idempotent
gcloud_client.reset_mocks()
perm.delete(deleted_by=user)
gcloud_client.revoke_download_access.assert_called_once()
gcloud_client.grant_download_access.assert_not_called()
# Deleting a record whose user doesn't exist leads to an error
gcloud_client.reset_mocks()
with pytest.raises(NoResultFound, match="no user with id"):
Permissions(granted_to_user=999999).delete(deleted_by=user)
gcloud_client.revoke_download_access.assert_not_called()
gcloud_client.grant_download_access.assert_not_called()
# If revoking a permission from a "network-viewer", no GCS IAM actions are taken
gcloud_client.revoke_download_access.reset_mock()
user.role = CIDCRole.NETWORK_VIEWER.value
user.update()
perm = Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type="ihc",
granted_by_user=user.id,
)
perm.insert()
perm.delete(deleted_by=user)
gcloud_client.revoke_download_access.assert_not_called()
def test_user_confirm_approval(clean_db, monkeypatch):
"""Ensure that users are notified when their account goes from pending to approved."""
confirm_account_approval = MagicMock()
monkeypatch.setattr(
"cidc_api.shared.emails.confirm_account_approval", confirm_account_approval
)
user = Users(email="*****@*****.**")
user.insert()
# The confirmation email shouldn't be sent for updates unrelated to account approval
user.update(changes={"first_n": "foo"})
confirm_account_approval.assert_not_called()
# The confirmation email should be sent for updates related to account approval
user.update(changes={"approval_date": datetime.now()})
confirm_account_approval.assert_called_once_with(user, send_email=True)
def test_common_update(clean_db):
"""Test update, inherited from CommonColumns"""
email = "foo"
user = Users(id=1, email=email)
# Record not found
with pytest.raises(NoResultFound):
user.update()
user.insert()
_updated = user._updated
# Update via setattr and changes
first_n = "hello"
last_n = "goodbye"
user.last_n = last_n
user.update(changes={"first_n": first_n})
user = Users.find_by_id(user.id)
assert user._updated > _updated
assert user.first_n == first_n
assert user.last_n == last_n
_updated = user._updated
_etag = user._etag
# Make sure you can clear a field to null
user.update(changes={"first_n": None})
user = Users.find_by_id(user.id)
assert user._updated > _updated
assert _etag != user._etag
assert user.first_n is None
_updated = user._updated
_etag = user._etag
# Make sure etags don't change if public fields don't change
user.update()
user = Users.find_by_id(user.id)
assert user._updated > _updated
assert _etag == user._etag
def test_permissions_insert(clean_db, monkeypatch, caplog):
gcloud_client = mock_gcloud_client(monkeypatch)
user = Users(email="*****@*****.**")
user.insert()
trial = TrialMetadata(trial_id=TRIAL_ID, metadata_json=METADATA)
trial.insert()
_insert = MagicMock()
monkeypatch.setattr(CommonColumns, "insert", _insert)
# if upload_type is invalid
with pytest.raises(ValueError, match="invalid upload type"):
Permissions(upload_type="foo", granted_to_user=user.id, trial_id=trial.trial_id)
# if don't give granted_by_user
perm = Permissions(
granted_to_user=user.id, trial_id=trial.trial_id, upload_type="wes_bam"
)
with pytest.raises(IntegrityError, match="`granted_by_user` user must be given"):
perm.insert()
_insert.assert_not_called()
# if give bad granted_by_user
_insert.reset_mock()
perm = Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type="wes_bam",
granted_by_user=999999,
)
with pytest.raises(IntegrityError, match="`granted_by_user` user must exist"):
perm.insert()
_insert.assert_not_called()
# if give bad granted_to_user
_insert.reset_mock()
perm = Permissions(
granted_to_user=999999,
trial_id=trial.trial_id,
upload_type="wes_bam",
granted_by_user=user.id,
)
with pytest.raises(IntegrityError, match="`granted_to_user` user must exist"):
perm.insert()
_insert.assert_not_called()
# This one will work
_insert.reset_mock()
perm = Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type="wes_bam",
granted_by_user=user.id,
)
with caplog.at_level(logging.DEBUG):
perm.insert()
_insert.assert_called_once()
assert any(
log_record.message.strip()
== f"admin-action: {user.email} gave {user.email} the permission wes_bam on {trial.trial_id}"
for log_record in caplog.records
)
gcloud_client.grant_download_access.assert_called_once()
# If granting a permission to a "network-viewer", no GCS IAM actions are taken
_insert.reset_mock()
gcloud_client.grant_download_access.reset_mock()
user.role = CIDCRole.NETWORK_VIEWER.value
user.update()
perm = Permissions(
granted_to_user=user.id,
trial_id=trial.trial_id,
upload_type="ihc",
granted_by_user=user.id,
)
perm.insert()
_insert.assert_called_once()
gcloud_client.grant_download_access.assert_not_called()
def test_authorize(cidc_api, clean_db):
"""Check that authorization works as expected."""
user = Users(**PAYLOAD)
with cidc_api.app_context():
# Unregistered user should not be authorized to do anything to any resource except "users"
with pytest.raises(Unauthorized, match="not registered"):
auth.authorize(user, [], "some-resource", "some-http-method")
# We can't track accesses for users who aren't registered
assert user._accessed is None
# Unregistered user should not be able to GET users
with pytest.raises(Unauthorized, match="not registered"):
auth.authorize(user, [], "users", "GET")
assert user._accessed is None
# Unregistered user should not be able to GET self
with pytest.raises(Unauthorized, match="not registered"):
auth.authorize(user, [], "self", "GET")
assert user._accessed is None
# Unregistered user should be able to POST users
assert auth.authorize(user, [], "self", "POST")
# Add the user to the db but don't approve yet
user.insert()
# Unapproved user isn't authorized to do anything
with pytest.raises(Unauthorized, match="pending approval"):
auth.authorize(user, [], "self", "POST")
# Check that we tracked this user's last access
assert user._accessed.date() == date.today()
_accessed = user._accessed
# Ensure unapproved user can access their own data
assert auth.authorize(user, [], "self", "GET")
# Give the user a role but don't approve them
user.role = CIDCRole.CIMAC_USER.value
user.update()
# Unapproved user *with an authorized role* still shouldn't be authorized
with pytest.raises(Unauthorized, match="pending approval"):
auth.authorize(user, [CIDCRole.CIMAC_USER.value], "self", "POST")
# Approve the user
user.approval_date = datetime.now()
user.update()
# If user doesn't have required role, they should not be authorized.
with pytest.raises(Unauthorized, match="not authorized to access"):
auth.authorize(user, [CIDCRole.ADMIN.value], "some-resource",
"some-http-method")
# If user has an allowed role, they should be authorized
assert auth.authorize(user, [CIDCRole.CIMAC_USER.value],
"some-resource", "some-http-method")
# If the resource has no role restrictions, they should be authorized
assert auth.authorize(user, [], "some-resource", "some-http-method")
# Disable user
user.disabled = True
user.update()
# If user has an allowed role but is disabled, they should be unauthorized
with pytest.raises(Unauthorized, match="disabled"):
auth.authorize(user, [CIDCRole.CIMAC_USER.value], "some-resource",
"some-http-method")
# Ensure unapproved user can access their own data
assert auth.authorize(user, [], "self", "GET")
# If the resource has no role restrictions, they should be still unauthorized
with pytest.raises(Unauthorized, match="disabled"):
auth.authorize(user, [], "some-resource", "some-http-method")
# Check that user's last access wasn't updated by all activity,
# since it occurred on the same day as previous accesses
assert user._accessed == _accessed