def check_pipeline_parameters(self):
"""Check pipeline parameters."""
from clinica.utils.spm import get_tpm
self.parameters.setdefault("tissue_classes", [1, 2, 3])
self.parameters.setdefault("dartel_tissues", [1, 2, 3])
self.parameters.setdefault("save_warped_unmodulated", True)
self.parameters.setdefault("save_warped_modulated", False)
self.parameters.setdefault("tissue_probability_maps", None)
# Fetch the TPM in case none was passed explicitly.
if not self.parameters["tissue_probability_maps"]:
self.parameters["tissue_probability_maps"] = get_tpm()
def check_pipeline_parameters(self):
"""Check pipeline parameters."""
from clinica.utils.spm import get_tpm
if 'tissue_classes' not in self.parameters.keys():
self.parameters['tissue_classes'] = [1, 2, 3]
if 'dartel_tissues' not in self.parameters.keys():
self.parameters['dartel_tissues'] = [1, 2, 3]
if 'tissue_probability_maps' not in self.parameters.keys():
self.parameters['tissue_probability_maps'] = None
if 'save_warped_unmodulated' not in self.parameters.keys():
self.parameters['save_warped_unmodulated'] = True
if 'save_warped_modulated' not in self.parameters.keys():
self.parameters['save_warped_modulated'] = False
# Get Tissue Probability Map from SPM
if self.parameters['tissue_probability_maps'] is None:
self.parameters['tissue_probability_maps'] = get_tpm()