Python _setup_galaxy_env_defaults Examples

Example #1

File: __init__.py Project: clsung/cloudbiolinux

def _setup_cloudbiolinux_fabric_properties(env, options):
    fabricrc_file = get_main_options_string(options, "fabricrc_file", None)
    if fabricrc_file:
        env.update(load_settings(fabricrc_file))
    else:
        # Let cloudbiolinux find out default file based on flavor, dist, etc...
        _parse_fabricrc(env)
    overrides = options.get("fabricrc_overrides", {})
    for key, value in overrides.iteritems():
        # yaml parses bools, wouldn't be expected coming out of a fabricrc
        # file so replace everything with a string.
        if isinstance(value, bool):
            overrides[key] = str(value)
    env.update(overrides)
    _setup_galaxy_env_defaults(env)

Example #2

File: __init__.py Project: janusz005/cloudbiolinux

def _setup_cloudbiolinux_fabric_properties(env, options):
    fabricrc_file = get_main_options_string(options, "fabricrc_file", None)
    if fabricrc_file:
        env.update(load_settings(fabricrc_file))
    else:
        # Let cloudbiolinux find out default file based on flavor, dist, etc...
        _parse_fabricrc(env)
    overrides = options.get("fabricrc_overrides", {})
    for key, value in overrides.iteritems():
        # yaml parses bools, wouldn't be expected coming out of a fabricrc
        # file so replace everything with a string.
        if isinstance(value, bool):
            overrides[key] = str(value)
    env.update(overrides)
    _setup_galaxy_env_defaults(env)

Example #3

def _prep_galaxy(env):
    _setup_users(env)
    _setup_galaxy_env_defaults(env)

Example #4

def _prep_galaxy(env):
    _setup_users(env)
    _setup_galaxy_env_defaults(env)