Python Clustering.consistency Examples

Example #1

File: test_clustering.py Project: svalkiers/clusTCR

 def test_metrics(self):
     metrics = Clustering().fit(self.cdr3).metrics(self.epitopes)
     metrics.purity()
     metrics.consistency()
     metrics.retention()
     metrics.purity_90()
     metrics.summary()

Example #2

File: test_clustering.py Project: svalkiers/clusTCR

 def test_quality(self):
     metrics = Clustering().fit(self.cdr3).metrics(self.epitopes)
     self.assertGreater(metrics.purity()[0], 0.6)
     self.assertGreater(metrics.consistency()[0], 0.12)
     self.assertGreater(metrics.retention(), 0.21)
     self.assertGreater(metrics.purity_90()[0], 0.36)