print('no inputs specified, please run ccCalc before')
exit()
else:
#Run ccCalc with initial args list
hklin = " ".join(str(x) for x in args.structures)
C = subprocess.Popen('ccCalc -f %s' % (hklin), cwd=os.getcwd())
#C = subprocess.Popen('/opt/pxsoft/bin/ccCalc', '-h',cwd=os.getcwd())
correlationFile = ('ccCluster_log.txt')
else:
correlationFile = args.DISTfile
CC = Clustering(correlationFile)
Tree = CC.avgTree()
etiquets = CC.createLabels()
threshold = CC.thrEstimation()
fileType = CC.inputType()
# #Main part of the program
# #with the different options, we can chose
# # to process through the shell,
# #count the multiplicity of the highest cluster
def main():
if args.threshold:
threshold = args.threshold
else:
threshold = CC.thrEstimation()
if args.shell:
CC.checkMultiplicity(threshold)
