Python merge_samples Examples

Example #1

File: test_commands.py Project: limbus-medtec/cnvkit-1

 def test_export_cdt_jtv(self):
     """The 'export' command for CDT and Java TreeView formats."""
     fnames = ["formats/p2-20_1.cnr", "formats/p2-20_2.cnr"]
     sample_ids = list(map(core.fbase, fnames))
     nrows = linecount(fnames[0]) - 1
     for fmt_key, header2 in (('cdt', 2), ('jtv', 0)):
         table = export.merge_samples(fnames)
         formatter = export.EXPORT_FORMATS[fmt_key]
         _oh, outrows = formatter(sample_ids, table)
         self.assertEqual(len(list(outrows)), nrows + header2)

Example #2

File: test_cnvlib.py Project: chapmanb/cnvkit

 def test_export_cdt_jtv(self):
     """The 'export' command for CDT and Java TreeView formats."""
     fnames = ["formats/p2-20_1.cnr", "formats/p2-20_2.cnr"]
     sample_ids = list(map(core.fbase, fnames))
     nrows = linecount(fnames[0]) - 1
     for fmt_key, header2 in (('cdt', 2), ('jtv', 0)):
         table = export.merge_samples(fnames)
         formatter = export.EXPORT_FORMATS[fmt_key]
         _oh, outrows = formatter(sample_ids, table)
         self.assertEqual(len(list(outrows)), nrows + header2)