def test_read_pickle(data_directory, mini_model, load_function):
"""Test the reading of model from pickle."""
if load_function is None:
pytest.skip()
with open(join(data_directory, "mini.pickle"), "rb") as infile:
pickle_model = load_function(infile)
assert compare_models(mini_model, pickle_model) is None
def test_read_pickle(data_directory, mini_model, load_function):
"""Test the reading of model from pickle."""
if load_function is None:
pytest.skip()
with open(join(data_directory, "mini.pickle"), "rb") as infile:
pickle_model = load_function(infile)
assert compare_models(mini_model, pickle_model) is None
def test_load_json_model(data_directory, mini_model):
"""Test the reading of JSON model."""
json_model = cio.load_json_model(join(data_directory, "mini.json"))
assert compare_models(mini_model, json_model) is None
def test_load_json_model(data_directory, mini_model):
"""Test the reading of JSON model."""
json_model = cio.load_json_model(join(data_directory, "mini.json"))
assert compare_models(mini_model, json_model) is None
def test_read_file_handle(data_directory, mini_model):
"""Test the reading of a model passed as a file handle."""
with open(join(data_directory, "mini_cobra.xml"), "rb") as file_:
model_stream = BytesIO(file_.read())
read_model = io.read_sbml_model(model_stream)
assert compare_models(mini_model, read_model) is None
def test_read_sbml_model(data_directory, mini_fbc1_model, mini_cobra_model):
"""Test the reading of a model from SBML v2."""
mini_fbc1 = io.read_legacy_sbml(join(data_directory, "mini_fbc1.xml"))
mini_cobra = io.read_legacy_sbml(join(data_directory, "mini_cobra.xml"))
assert compare_models(mini_fbc1_model, mini_fbc1) is None
assert compare_models(mini_cobra_model, mini_cobra) is None
def test_load_yaml_model(data_directory, mini_model):
"""Test the reading of YAML model."""
yaml_model = cio.load_yaml_model(join(data_directory, "mini.yml"))
assert compare_models(mini_model, yaml_model) is None
def test_load_matlab_model(data_directory, mini_model, raven_model):
"""Test the reading of MAT model."""
mini_mat_model = io.load_matlab_model(join(data_directory, "mini.mat"))
raven_mat_model = io.load_matlab_model(join(data_directory, "raven.mat"))
assert compare_models(mini_model, mini_mat_model) is None
assert compare_models(raven_model, raven_mat_model) is None
def test_load_yaml_model(data_directory, mini_model):
"""Test the reading of YAML model."""
yaml_model = cio.load_yaml_model(join(data_directory, "mini.yml"))
assert compare_models(mini_model, yaml_model) is None
def test_read_sbml_model(data_directory, mini_model, sbml_file):
"""Test the reading of a model from SBML3."""
sbml3_model = io.read_sbml_model(join(data_directory, sbml_file))
assert compare_models(mini_model, sbml3_model) is None
def test_load_matlab_model(data_directory, mini_model, raven_model):
"""Test the reading of MAT model."""
mini_mat_model = io.load_matlab_model(join(data_directory, "mini.mat"))
raven_mat_model = io.load_matlab_model(join(data_directory, "raven.mat"))
assert compare_models(mini_model, mini_mat_model) is None
assert compare_models(raven_model, raven_mat_model) is None