def run_extract_extremes():
    """
    Tests whether extract_extremes() from extract_extremes.py works correctly for the given input.
    """
    from extract_extremes import extract_extremes
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    extract_extremes(abspath(join(base_path, 'test-data', 'archives-input')),
                     abspath(join(base_path, 'test-data', 'archives-extremes.txt')),
                     parse_range('1-55'),
                     parse_range('1-10'),
                     parse_range('2,3,5,10,20,40'))

    assert compare_files(abspath(join(base_path, 'test-data', 'archives-extremes.txt')),
                         abspath(join(base_path, 'test-data', 'archives-results', 'archives-extremes.txt')))
def run_archive_difference():
    """
    Tests whether archive_difference() from archive_difference.py works correctly for the given input.
    """
    from archive_difference import archive_difference
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_difference(abspath(join(base_path, 'test-data', 'archives-input', 'a')),
                       abspath(join(base_path, 'test-data', 'archives-input', 'b')),
                       abspath(join(base_path, 'test-data', 'archives-diff.txt')),
                       parse_range('1-55'),
                       parse_range('1-10'),
                       parse_range('2,3,5,10,20,40'))

    assert compare_files(abspath(join(base_path, 'test-data', 'archives-diff.txt')),
                         abspath(join(base_path, 'test-data', 'archives-results', 'archives-diff.txt')))
def run_archive_split():
    """
    Tests whether archive_split() from archive_split.py works correctly for the given input.
    """
    from archive_split import archive_split
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_split(abspath(join(base_path, 'test-data', 'archives-input')),
                  abspath(join(base_path, 'test-data', 'archives-split')),
                  parse_range('1-55'),
                  parse_range('1-10'),
                  parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(join(base_path, 'test-data', 'archives-split')), topdown=False):
        for name in files:
            assert compare_files(abspath(join(base_path, 'test-data', 'archives-results', name)),
                                 abspath(join(base_path, 'test-data', 'archives-split', name)))
Example #4
0
def run_extract_extremes():
    """
    Tests whether extract_extremes() from extract_extremes.py works correctly for the given input.
    """
    from extract_extremes import extract_extremes
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    extract_extremes(
        abspath(join(base_path, 'test-data', 'archives-input')),
        abspath(join(base_path, 'test-data', 'archives-extremes.txt')),
        parse_range('1-55'), parse_range('1-10'),
        parse_range('2,3,5,10,20,40'))

    assert compare_files(
        abspath(join(base_path, 'test-data', 'archives-extremes.txt')),
        abspath(
            join(base_path, 'test-data', 'archives-results',
                 'archives-extremes.txt')))
def run_log_reconstruct():
    """
    Tests whether log_reconstruct() from log_reconstruct.py works correctly for the given input.
    """
    from log_reconstruct import log_reconstruct
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    log_reconstruct(abspath(join(base_path, 'test-data', 'archives-input')),
                    'reconstruction',
                    'RECONSTRUCTOR',
                    'A test for reconstruction of logger output',
                    parse_range('1-55'),
                    parse_range('1-10'),
                    parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(join(base_path, 'exdata', 'reconstruction')), topdown=False):
        for name in files:
            compare_files(abspath(join(root, name)),
                          abspath(join(root, name)).replace('exdata', 'test-data'))
Example #6
0
def run_log_reconstruct():
    """
    Tests whether log_reconstruct() from log_reconstruct.py works correctly for the given input.
    """
    from log_reconstruct import log_reconstruct
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    log_reconstruct(abspath(join(base_path, 'test-data', 'archives-input')),
                    'reconstruction',
                    'RECONSTRUCTOR',
                    'A test for reconstruction of logger output',
                    parse_range('1-55'),
                    parse_range('1-10'),
                    parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(join(base_path, 'exdata', 'reconstruction')), topdown=False):
        for name in files:
            compare_files(abspath(join(root, name)),
                          abspath(join(root, name)).replace('exdata', 'test-data'))
Example #7
0
def run_archive_difference():
    """
    Tests whether archive_difference() from archive_difference.py works correctly for the given input.
    """
    from archive_difference import archive_difference
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_difference(
        abspath(join(base_path, 'test-data', 'archives-input', 'a')),
        abspath(join(base_path, 'test-data', 'archives-input', 'b')),
        abspath(join(base_path, 'test-data', 'archives-diff.txt')),
        parse_range('1-55'), parse_range('1-10'),
        parse_range('2,3,5,10,20,40'))

    assert compare_files(
        abspath(join(base_path, 'test-data', 'archives-diff.txt')),
        abspath(
            join(base_path, 'test-data', 'archives-results',
                 'archives-diff.txt')))
def run_archive_update():
    """
    Tests whether merge_archives() from archive_update.py works correctly for the given input.
    """
    from archive_update import merge_archives
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    new_hypervolumes = merge_archives(abspath(join(base_path, 'test-data', 'archives-input')),
                                      abspath(join(base_path, 'test-data', 'archives-output')),
                                      parse_range('1-55'),
                                      parse_range('1-10'),
                                      parse_range('2,3,5,10,20,40'),
                                      False)

    precision = 1e-13

    assert len(new_hypervolumes) == 22

    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d02'), 0.107610318984904, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d03'), 0.227870801380100, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d05'), 0.438362398133288, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d10'), 0.742933437184518, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d20'), 0.587349925250638, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d40'), 0.359511886735384, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i06_d05'), 0.038070322787987, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i07_d05'), 0.129884501203751, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i08_d05'), 0.000760506516737, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i09_d05'), 0.025178346536679, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i10_d05'), 0.001064503341995, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f08_i06_d05'), 0.791099512196690, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f16_i02_d05'), 0.888980819178966, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f17_i01_d05'), 0.948755656523708, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f18_i07_d10'), 0.948488874548393, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f24_i10_d03'), 0.985816809701546, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f25_i02_d05'), 0.933561771067860, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f34_i07_d05'), 0.951275562997383, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f48_i07_d02'), 0.985762281913168, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f50_i07_d02'), 0.893071152604545, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f51_i02_d05'), 0.920488608198097, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f52_i07_d02'), 0.920581303184137, precision)
Example #9
0
def run_archive_split():
    """
    Tests whether archive_split() from archive_split.py works correctly for the given input.
    """
    from archive_split import archive_split
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_split(abspath(join(base_path, 'test-data', 'archives-input')),
                  abspath(join(base_path, 'test-data', 'archives-split')),
                  parse_range('1-55'), parse_range('1-10'),
                  parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(
            join(base_path, 'test-data', 'archives-split')),
                                  topdown=False):
        for name in files:
            assert compare_files(
                abspath(join(base_path, 'test-data', 'archives-results',
                             name)),
                abspath(join(base_path, 'test-data', 'archives-split', name)))
Example #10
0
def run_archive_analysis():
    """
    Tests whether archive_analysis() and summary_analysis() from archive_analysis.py work correctly for the given input.
    """
    from archive_analysis import archive_analysis, summary_analysis
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_analysis(abspath(join(base_path, 'test-data', 'archives-input')),
                     abspath(join(base_path, 'test-data', 'archives-analysis')),
                     -3.5,
                     5,
                     parse_range('48'),
                     parse_range('1-10'),
                     parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(join(base_path, 'test-data', 'archives-analysis')), topdown=False):
        for name in files:
            assert compare_files(abspath(join(base_path, 'test-data', 'archives-results', name)),
                                 abspath(join(base_path, 'test-data', 'archives-analysis', name)))

    summary_analysis(abspath(join(base_path, 'test-data', 'archives-analysis')),
                     abspath(join(base_path, 'test-data', 'archives-analysis.txt')),
                     -3.5,
                     5,
                     parse_range('48'),
                     parse_range('1-10'),
                     parse_range('2,3,5,10,20,40'))

    assert compare_files(abspath(join(base_path, 'test-data', 'archives-analysis.txt')),
                         abspath(join(base_path, 'test-data', 'archives-results', 'archives-analysis.txt')))
Example #11
0
def run_archive_analysis():
    """
    Tests whether archive_analysis() and summary_analysis() from archive_analysis.py work correctly for the given input.
    """
    from archive_analysis import archive_analysis, summary_analysis
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    archive_analysis(
        abspath(join(base_path, 'test-data', 'archives-input')),
        abspath(join(base_path, 'test-data', 'archives-analysis')), -3.5, 5,
        parse_range('48'), parse_range('1-10'), parse_range('2,3,5,10,20,40'))

    for root, dirs, files in walk(abspath(
            join(base_path, 'test-data', 'archives-analysis')),
                                  topdown=False):
        for name in files:
            assert compare_files(
                abspath(join(base_path, 'test-data', 'archives-results',
                             name)),
                abspath(join(base_path, 'test-data', 'archives-analysis',
                             name)))

    summary_analysis(
        abspath(join(base_path, 'test-data', 'archives-analysis')),
        abspath(join(base_path, 'test-data', 'archives-analysis.txt')),
        -3.5, 5, parse_range('48'), parse_range('1-10'),
        parse_range('2,3,5,10,20,40'))

    assert compare_files(
        abspath(join(base_path, 'test-data', 'archives-analysis.txt')),
        abspath(
            join(base_path, 'test-data', 'archives-results',
                 'archives-analysis.txt')))
Example #12
0
def run_archive_update():
    """
    Tests whether merge_archives() from archive_update.py works correctly for the given input.
    """
    from archive_update import merge_archives
    from cocoprep.archive_load_data import parse_range

    base_path = dirname(__file__)
    new_hypervolumes = merge_archives(
        abspath(join(base_path, 'test-data', 'archives-input')),
        abspath(join(base_path, 'test-data', 'archives-output')),
        parse_range('1-55'), parse_range('1-10'),
        parse_range('2,3,5,10,20,40'), False)

    precision = 1e-13

    assert len(new_hypervolumes) == 22

    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d02'),
                        0.107610318984904, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d03'),
                        0.227870801380100, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d05'),
                        0.438362398133288, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d10'),
                        0.742933437184518, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d20'),
                        0.587349925250638, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f01_i04_d40'),
                        0.359511886735384, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i06_d05'),
                        0.038070322787987, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i07_d05'),
                        0.129884501203751, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i08_d05'),
                        0.000760506516737, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i09_d05'),
                        0.025178346536679, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f03_i10_d05'),
                        0.001064503341995, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f08_i06_d05'),
                        0.791099512196690, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f16_i02_d05'),
                        0.888980819178966, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f17_i01_d05'),
                        0.948755656523708, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f18_i07_d10'),
                        0.948488874548393, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f24_i10_d03'),
                        0.985816809701546, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f25_i02_d05'),
                        0.933561771067860, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f34_i07_d05'),
                        0.951275562997383, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f48_i07_d02'),
                        0.985762281913168, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f50_i07_d02'),
                        0.893071152604545, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f51_i02_d05'),
                        0.920488608198097, precision)
    assert almost_equal(new_hypervolumes.get('bbob-biobj_f52_i07_d02'),
                        0.920581303184137, precision)