class OrtTestCase(TestCase):
def setUp(self):
self.m = DiGraph()
self.c = DiGraph()
self.e = EndGraph()
def test_unknown_input_does_not_pollute(self):
self.m.add_edges_from([('A-1', 'B-1', {
'RC': 'S',
'PDC': 0
}), ('B-1', 'A-1', {
'RC': 'L',
'PDC': 0
}), ('A-2', 'B-1', {
'RC': 'S',
'PDC': 0
}), ('B-1', 'A-2', {
'RC': 'L',
'PDC': 0
}), ('A-3', 'B-2', {
'RC': 'S',
'PDC': 0
}), ('B-2', 'A-3', {
'RC': 'L',
'PDC': 0
}), ('A-4', 'B-2', {
'RC': 'S',
'PDC': 0
}), ('B-2', 'A-4', {
'RC': 'L',
'PDC': 0
})])
self.c.add_edge('A-2',
'A-3',
EC_Source='P',
EC_Target='P',
PDC_EC_Source=0,
PDC_EC_Target=0,
PDC_Site_Source=0,
PDC_Site_Target=0)
self.e.add_translated_edges(self.m, self.c, 'B', 'original')
self.assertEqual(self.e.number_of_edges(), 1)
self.assertEqual(self.e['1']['2']['EC_Source'], 'P')
self.assertEqual(self.e['1']['2']['EC_Target'], 'P')
def test_translate_attr_modified():
mock_conn = DiGraph()
mock_conn.add_edge('B-1', 'B-2', Connection='Present')
translate = EndGraph._translate_attr_modified.im_func
# PDCs that get averaged are 3 (RCs), 6 (existent conn edge), and
# 18 (non-existent conn edge).
nt.assert_equal(
translate(EndGraph(), ('A-1', ['B-1', 'B-3']), ('A-2', ['B-2']), None,
mock_conn), {
'Connection': 'Present',
'PDC': 6.6
})
def test_translate_attr_original():
mock_conn = DiGraph()
mock_conn.add_edge('B-1', 'B-2', {'EC_Source': 'N', 'EC_Target': 'Nc'})
translate = EndGraph._translate_attr_original.im_func
# PDCs that get averaged are 3 (RCs), 6 (existent conn edge), and
# 18 (non-existent conn edge).
nt.assert_equal(
translate(EndGraph(), ('A-1', ['B-1', 'B-3']), ('A-2', ['B-2']), None,
mock_conn), {
'EC_Source': 'N',
'EC_Target': 'Nc',
'PDC': 6.6
})
class OrtTestCase(TestCase):
def setUp(self):
self.m = DiGraph()
self.c = DiGraph()
self.e = EndGraph()
def test_unknown_input_does_not_pollute(self):
self.m.add_edges_from([('A-1', 'B-1', {'RC': 'S', 'PDC': 0}),
('B-1', 'A-1', {'RC': 'L', 'PDC': 0}),
('A-2', 'B-1', {'RC': 'S', 'PDC': 0}),
('B-1', 'A-2', {'RC': 'L', 'PDC': 0}),
('A-3', 'B-2', {'RC': 'S', 'PDC': 0}),
('B-2', 'A-3', {'RC': 'L', 'PDC': 0}),
('A-4', 'B-2', {'RC': 'S', 'PDC': 0}),
('B-2', 'A-4', {'RC': 'L', 'PDC': 0})])
self.c.add_edge('A-2', 'A-3', EC_Source='P', EC_Target='P',
PDC_EC_Source=0, PDC_EC_Target=0, PDC_Site_Source=0,
PDC_Site_Target=0)
self.e.add_translated_edges(self.m, self.c, 'B', 'original')
self.assertEqual(self.e.number_of_edges(), 1)
self.assertEqual(self.e['1']['2']['EC_Source'], 'P')
self.assertEqual(self.e['1']['2']['EC_Target'], 'P')
def test_make_translation_dict():
translate = EndGraph._make_translation_dict.im_func
nt.assert_equal(translate(EndGraph(), None, 'A-1', 'B'), {'X': ['X']})
nt.assert_equal(translate(EndGraph(), None, 'A-1', 'A'), {'A-1': ['A-1']})
def setUp(self):
self.m = DiGraph()
self.c = DiGraph()
self.e = EndGraph()
def setUp(self):
self.m = DiGraph()
self.c = DiGraph()
self.e = EndGraph()
