def cmd_dynamic(args):
dyn_directory = resource_filename(__name__, "R/shiny/apps")
if args.graph is None and not(args.list):
log.critical("No dynamic graph given!")
if args.list or args.graph is None:
print('List of possible dynamic graphs:')
for s in sorted(os.listdir(dyn_directory)):
if os.path.isdir(os.path.join(dyn_directory, s)):
print(" * " + s)
return 1
cwd = os.path.join(dyn_directory, args.graph)
cfg = os.path.abspath(args.config)
if not os.path.exists(cwd):
log.critical('Path "{}" not found!'.format(cwd))
return 1
Rcode = "library(shiny); runApp(host='0.0.0.0', port={})".format(args.port)
cmd = ["Rscript", "-e", Rcode, "-c", cfg]
execute_command(cmd, direct_io=True, cwd=cwd)
def testTestThat(self):
path = resource_filename("codeface", "R")
Rcode = 'library(testthat); if (test_dir(".")$n > 0) stop("Some tests failed.")'
cmd = ["Rscript", "-e", Rcode]
execute_command(cmd, direct_io=True, cwd=path)
def testThat_cluster_dir(self):
path = resource_filename("codeface", "R")
cmd = ["Rscript", "do_test.r"]
execute_command(cmd, direct_io=True, cwd=path)
def testTest_R_dir(self):
path = resource_filename("codeface", "R")
Rcode = 'library(testthat); if (all(data.frame(test_dir("."))[, "failed"])) stop("Some tests failed.")'
cmd = ["Rscript", "-e", Rcode]
execute_command(cmd, direct_io=True, cwd=path)
def testThat_cluster_dir(self):
path = resource_filename("codeface", "R")
Rcode = 'library(testthat); if (all(data.frame(test_dir("cluster"))[, "failed"])) stop("Some tests failed.")'
cmd = ["Rscript", "-e", Rcode]
execute_command(cmd, direct_io=True, cwd=path)