"GTG",
"GTT",
"TAC",
"TAT",
"TCA",
"TCC",
"TCG",
"TCT",
"TGC",
"TGG",
"TGT",
"TTA",
"TTC",
"TTG",
"TTT",
]
self.assertEqualSets(alpha, expected)
def test_constructing_from_func(self):
"""the CodonAlphabet function should support genetic code names as well"""
alpha_int = CodonAlphabet(1)
alpha_name = CodonAlphabet("Standard Nuclear")
self.assertEqual(alpha_int, alpha_name)
alpha_int = CodonAlphabet(2)
alpha_name = CodonAlphabet("Vertebrate Mitochondrial")
self.assertEqual(alpha_int, alpha_name)
if __name__ == "__main__":
main()
class BoobyTrappedStream(object):
def __init__(self, output):
self.output = output
def write(self, text):
self.output.write(text)
raise RuntimeError("Output not allowed in tests")
def flush(self):
pass
def isatty(self):
return False
if __name__ == '__main__':
if '--debug' in sys.argv:
s = suite()
s.debug()
else:
orig = sys.stdout
if '--output-ok' in sys.argv:
sys.argv.remove('--output-ok')
else:
sys.stdout = BoobyTrappedStream(orig)
try:
unittest.main(defaultTest='suite', argv=sys.argv)
finally:
sys.stdout = orig
