def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects self.camera = camera.Camera() self.microcontroller = microcontroller.Microcontroller_Simulation() self.configurationManager = core.ConfigurationManager() self.streamHandler = core.StreamHandler() self.liveController = core.LiveController(self.camera,self.microcontroller,self.configurationManager) self.imageSaver = core.ImageSaver() self.imageDisplay = core.ImageDisplay() # open the camera # camera start streaming self.camera.open() self.camera.set_software_triggered_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget(self.camera,self.liveController) self.liveControlWidget = widgets.LiveControlWidget(self.streamHandler,self.liveController,self.configurationManager) self.recordingControlWidget = widgets.RecordingWidget(self.streamHandler,self.imageSaver) # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget,0,0) layout.addWidget(self.liveControlWidget,1,0) layout.addWidget(self.recordingControlWidget,4,0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow = core.ImageDisplayWindow() self.imageDisplayWindow.show() # make connections self.streamHandler.signal_new_frame_received.connect(self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplay.enqueue) self.streamHandler.packet_image_to_write.connect(self.imageSaver.enqueue) self.imageDisplay.image_to_display.connect(self.imageDisplayWindow.display_image) # may connect streamHandler directly to imageDisplayWindow self.liveControlWidget.signal_newExposureTime.connect(self.cameraSettingWidget.set_exposure_time) self.liveControlWidget.signal_newAnalogGain.connect(self.cameraSettingWidget.set_analog_gain) self.liveControlWidget.update_camera_settings()
def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects self.microcontroller = microcontroller.Microcontroller_Simulation() self.navigationController = core.NavigationController( self.microcontroller) self.camera_1 = camera.Camera_Simulation(sn='FW0190110139') # tracking self.camera_2 = camera.Camera_Simulation( sn='FU0190090030') # fluorescence self.configurationManager_1 = core.ConfigurationManager( filename=str(Path.home()) + "/configurations_tracking.xml") self.configurationManager_2 = core.ConfigurationManager( filename=str(Path.home()) + "/configurations_fluorescence.xml") self.streamHandler_1 = core.StreamHandler() self.liveController_1 = core.LiveController( self.camera_1, self.microcontroller, self.configurationManager_1, control_illumination=False) #self.autofocusControlle_1 = core.AutoFocusController(self.camera,self.navigationController,self.liveController) #self.multipointController_1 = core.MultiPointController(self.camera,self.navigationController,self.liveController,self.autofocusController,self.configurationManager) self.imageSaver_1 = core.ImageSaver() self.streamHandler_2 = core.StreamHandler() self.liveController_2 = core.LiveController( self.camera_2, self.microcontroller, self.configurationManager_2, control_illumination=True) self.autofocusController_2 = core.AutoFocusController( self.camera_2, self.navigationController, self.liveController_2) self.multipointController_2 = core.MultiPointController( self.camera_2, self.navigationController, self.liveController_2, self.autofocusController_2, self.configurationManager_2) self.imageSaver_2 = core.ImageSaver() self.trackingController = core.TrackingController( self.microcontroller, self.navigationController) # open the camera # camera start streaming self.camera_1.open() self.camera_1.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera_1.set_callback(self.streamHandler_1.on_new_frame) self.camera_1.enable_callback() self.camera_2.open() self.camera_2.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera_2.set_callback(self.streamHandler_2.on_new_frame) self.camera_2.enable_callback() # load widgets self.navigationWidget = widgets.NavigationWidget( self.navigationController) self.cameraSettingWidget_1 = widgets.CameraSettingsWidget( self.camera_1, self.liveController_1) self.liveControlWidget_1 = widgets.LiveControlWidget( self.streamHandler_1, self.liveController_1, self.configurationManager_1) self.recordingControlWidget_1 = widgets.RecordingWidget( self.streamHandler_1, self.imageSaver_1) #self.trackingControlWidget = widgets.TrackingControllerWidget(self.streamHandler_1,self.trackingController) self.cameraSettingWidget_2 = widgets.CameraSettingsWidget( self.camera_2, self.liveController_2) self.liveControlWidget_2 = widgets.LiveControlWidget( self.streamHandler_2, self.liveController_2, self.configurationManager_2) #self.recordingControlWidget_2 = widgets.RecordingWidget(self.streamHandler_2,self.imageSaver_2) self.multiPointWidget_2 = widgets.MultiPointWidget( self.multipointController_2, self.configurationManager_2) # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget_1, 0, 0) layout.addWidget(self.liveControlWidget_1, 1, 0) layout.addWidget(self.navigationWidget, 2, 0) #layout.addWidget(self.autofocusWidget,3,0) layout.addWidget(self.recordingControlWidget_1, 4, 0) layout.addWidget(self.cameraSettingWidget_2, 5, 0) layout.addWidget(self.liveControlWidget_2, 6, 0) #layout.addWidget(self.recordingControlWidget_2,7,0) layout.addWidget(self.multiPointWidget_2, 8, 0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow_1 = core.ImageDisplayWindow('Tracking') self.imageDisplayWindow_1.show() self.imageDisplayWindow_2 = core.ImageDisplayWindow('Fluorescence') self.imageDisplayWindow_2.show() self.imageArrayDisplayWindow = core.ImageArrayDisplayWindow( 'Multi-channel') self.imageArrayDisplayWindow.show() # make connections self.navigationController.xPos.connect( self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect( self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect( self.navigationWidget.label_Zpos.setNum) self.streamHandler_1.signal_new_frame_received.connect( self.liveController_1.on_new_frame) self.streamHandler_1.image_to_display.connect( self.imageDisplayWindow_1.display_image) self.streamHandler_1.packet_image_to_write.connect( self.imageSaver_1.enqueue) #self.streamHandler_1.packet_image_for_tracking.connect(self.trackingController.on_new_frame) self.liveControlWidget_1.signal_newExposureTime.connect( self.cameraSettingWidget_1.set_exposure_time) self.liveControlWidget_1.signal_newAnalogGain.connect( self.cameraSettingWidget_1.set_analog_gain) self.liveControlWidget_1.update_camera_settings() self.streamHandler_2.signal_new_frame_received.connect( self.liveController_2.on_new_frame) self.streamHandler_2.image_to_display.connect( self.imageDisplayWindow_2.display_image) self.streamHandler_2.packet_image_to_write.connect( self.imageSaver_2.enqueue) self.liveControlWidget_2.signal_newExposureTime.connect( self.cameraSettingWidget_2.set_exposure_time) self.liveControlWidget_2.signal_newAnalogGain.connect( self.cameraSettingWidget_2.set_analog_gain) self.liveControlWidget_2.update_camera_settings() self.multipointController_2.image_to_display.connect( self.imageDisplayWindow_2.display_image) self.multipointController_2.image_to_display_multi.connect( self.imageArrayDisplayWindow.display_image) self.multipointController_2.signal_current_configuration.connect( self.liveControlWidget_2.set_microscope_mode)
def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects self.internal_states = Internal_States() self.microcontroller = microcontroller.Microcontroller() self.navigationController = core.NavigationController( self.microcontroller) self.PDAFController = core_PDAF.PDAFController(self.internal_states) self.camera_1 = camera.Camera(sn='FW0200050063') # tracking self.camera_2 = camera.Camera(sn='FW0200050068') # fluorescence self.configurationManager = core.ConfigurationManager( filename=str(Path.home()) + "/configurations_PDAF.xml") self.streamHandler_1 = core.StreamHandler() self.liveController_1 = core.LiveController(self.camera_1, self.microcontroller, self.configurationManager, control_illumination=False) self.imageSaver_1 = core.ImageSaver() self.streamHandler_2 = core.StreamHandler() self.liveController_2 = core.LiveController(self.camera_2, self.microcontroller, self.configurationManager, control_illumination=True) self.imageSaver_2 = core.ImageSaver() self.twoCamerasPDAFCalibrationController = core_PDAF.TwoCamerasPDAFCalibrationController( self.camera_1, self.camera_2, self.navigationController, self.liveController_1, self.liveController_2, self.configurationManager) # open the camera # camera start streaming self.camera_1.open() self.camera_1.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera_1.set_callback(self.streamHandler_1.on_new_frame) self.camera_1.enable_callback() self.camera_2.open() self.camera_2.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera_2.set_callback(self.streamHandler_2.on_new_frame) self.camera_2.enable_callback() # load widgets self.navigationWidget = widgets.NavigationWidget( self.navigationController) self.cameraSettingWidget_1 = widgets.CameraSettingsWidget( self.camera_1, self.liveController_1) self.liveControlWidget_1 = widgets.LiveControlWidget( self.streamHandler_1, self.liveController_1, self.configurationManager) self.cameraSettingWidget_2 = widgets.CameraSettingsWidget( self.camera_2, self.liveController_2) self.liveControlWidget_2 = widgets.LiveControlWidget( self.streamHandler_2, self.liveController_2, self.configurationManager) # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget_1, 0, 0) layout.addWidget(self.liveControlWidget_1, 1, 0) layout.addWidget(self.cameraSettingWidget_2, 0, 1) layout.addWidget(self.liveControlWidget_2, 1, 1) layout.addWidget(self.navigationWidget, 7, 0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow_1 = core.ImageDisplayWindow('camera 1') self.imageDisplayWindow_1.show() self.imageDisplayWindow_2 = core.ImageDisplayWindow('camera 2') self.imageDisplayWindow_2.show() # make connections self.navigationController.xPos.connect( self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect( self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect( self.navigationWidget.label_Zpos.setNum) self.streamHandler_1.signal_new_frame_received.connect( self.liveController_1.on_new_frame) self.streamHandler_1.image_to_display.connect( self.imageDisplayWindow_1.display_image) self.streamHandler_1.packet_image_to_write.connect( self.imageSaver_1.enqueue) #self.streamHandler_1.packet_image_for_tracking.connect(self.trackingController.on_new_frame) self.liveControlWidget_1.signal_newExposureTime.connect( self.cameraSettingWidget_1.set_exposure_time) self.liveControlWidget_1.signal_newAnalogGain.connect( self.cameraSettingWidget_1.set_analog_gain) self.liveControlWidget_1.update_camera_settings() self.streamHandler_2.signal_new_frame_received.connect( self.liveController_2.on_new_frame) self.streamHandler_2.image_to_display.connect( self.imageDisplayWindow_2.display_image) self.streamHandler_2.packet_image_to_write.connect( self.imageSaver_2.enqueue) self.liveControlWidget_2.signal_newExposureTime.connect( self.cameraSettingWidget_2.set_exposure_time) self.liveControlWidget_2.signal_newAnalogGain.connect( self.cameraSettingWidget_2.set_analog_gain) self.liveControlWidget_2.update_camera_settings() self.streamHandler_1.image_to_display.connect( self.PDAFController.register_image_from_camera_1) self.streamHandler_2.image_to_display.connect( self.PDAFController.register_image_from_camera_2)
def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects self.camera = camera.Camera() self.microcontroller = microcontroller.Microcontroller_Simulation() self.configurationManager = core.ConfigurationManager() self.streamHandler = core_volumetric_imaging.StreamHandler( crop_width=500, crop_height=500) self.liveController = core.LiveController(self.camera, self.microcontroller, self.configurationManager) self.navigationController = core.NavigationController( self.microcontroller) self.autofocusController = core.AutoFocusController( self.camera, self.navigationController, self.liveController) self.multipointController = core.MultiPointController( self.camera, self.navigationController, self.liveController, self.autofocusController, self.configurationManager) self.trackingController = core.TrackingController( self.microcontroller, self.navigationController) self.imageSaver = core.ImageSaver() self.imageDisplay = core.ImageDisplay() # open the camera # camera start streaming self.camera.open() self.camera.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget( self.camera, self.liveController) self.liveControlWidget = widgets.LiveControlWidget( self.streamHandler, self.liveController, self.configurationManager) self.navigationWidget = widgets.NavigationWidget( self.navigationController) self.autofocusWidget = widgets.AutoFocusWidget( self.autofocusController) self.recordingControlWidget = widgets.RecordingWidget( self.streamHandler, self.imageSaver) self.trackingControlWidget = widgets.TrackingControllerWidget( self.streamHandler, self.trackingController) self.multiPointWidget = widgets.MultiPointWidget( self.multipointController, self.configurationManager) self.recordTabWidget = QTabWidget() self.recordTabWidget.addTab(self.recordingControlWidget, "Simple Recording") # self.recordTabWidget.addTab(self.trackingControlWidget, "Tracking") # self.recordTabWidget.addTab(self.multiPointWidget, "Multipoint Acquisition") # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget, 0, 0) layout.addWidget(self.liveControlWidget, 1, 0) # layout.addWidget(self.navigationWidget,2,0) # layout.addWidget(self.autofocusWidget,3,0) layout.addWidget(self.recordTabWidget, 4, 0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow = core.ImageDisplayWindow() self.imageArrayDisplayWindow = core_volumetric_imaging.ImageArrayDisplayWindow( ) self.imageDisplayWindow.show() self.imageArrayDisplayWindow.show() # make connections self.streamHandler.signal_new_frame_received.connect( self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplay.enqueue) self.streamHandler.packet_image_to_write.connect( self.imageSaver.enqueue) self.streamHandler.packet_image_for_tracking.connect( self.trackingController.on_new_frame) self.streamHandler.packet_image_for_array_display.connect( self.imageArrayDisplayWindow.display_image) self.imageDisplay.image_to_display.connect( self.imageDisplayWindow.display_image ) # may connect streamHandler directly to imageDisplayWindow self.navigationController.xPos.connect( self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect( self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect( self.navigationWidget.label_Zpos.setNum) self.autofocusController.image_to_display.connect( self.imageDisplayWindow.display_image) # self.multipointController.image_to_display.connect(self.imageDisplayWindow.display_image) self.multipointController.signal_current_configuration.connect( self.liveControlWidget.set_microscope_mode) self.multipointController.image_to_display_multi.connect( self.imageArrayDisplayWindow.display_image) self.liveControlWidget.signal_newExposureTime.connect( self.cameraSettingWidget.set_exposure_time) self.liveControlWidget.signal_newAnalogGain.connect( self.cameraSettingWidget.set_analog_gain) self.liveControlWidget.update_camera_settings()
def __init__(self, is_simulation = False, *args, **kwargs): super().__init__(*args, **kwargs) # load objects if is_simulation: self.camera = camera.Camera_Simulation() self.microcontroller = microcontroller.Microcontroller_Simulation() else: self.camera = camera.Camera() self.microcontroller = microcontroller.Microcontroller() self.configurationManager = core.ConfigurationManager(filename=str(Path.home()) + "/configurations_platereader.xml") self.streamHandler = core.StreamHandler() self.liveController = core.LiveController(self.camera,self.microcontroller,self.configurationManager) self.navigationController = core.NavigationController(self.microcontroller) self.plateReaderNavigationController = core.PlateReaderNavigationController(self.microcontroller) self.autofocusController = core.AutoFocusController(self.camera,self.navigationController,self.liveController) self.plateReadingController = core_platereader.PlateReadingController(self.camera,self.plateReaderNavigationController,self.liveController,self.autofocusController,self.configurationManager) self.imageSaver = core.ImageSaver() # open the camera # camera start streaming self.camera.open() self.camera.set_software_triggered_acquisition() #self.camera.set_continuous_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget(self.camera,include_gain_exposure_time=False) self.liveControlWidget = widgets.LiveControlWidget(self.streamHandler,self.liveController,self.configurationManager,show_trigger_options=False,show_display_options=False) self.autofocusWidget = widgets.AutoFocusWidget(self.autofocusController) self.plateReaderAcquisitionWidget = widgets.PlateReaderAcquisitionWidget(self.plateReadingController,self.configurationManager,show_configurations=False) self.plateReaderNavigationWidget = widgets.PlateReaderNavigationWidget(self.plateReaderNavigationController) # layout widgets layout = QGridLayout() #layout = QStackedLayout() #layout.addWidget(self.cameraSettingWidget,0,0) layout.addWidget(self.liveControlWidget,1,0) layout.addWidget(self.plateReaderNavigationWidget,2,0) layout.addWidget(self.autofocusWidget,3,0) layout.addWidget(self.plateReaderAcquisitionWidget,4,0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow = core.ImageDisplayWindow() self.imageDisplayWindow.show() # make connections self.streamHandler.signal_new_frame_received.connect(self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplayWindow.display_image) self.streamHandler.packet_image_to_write.connect(self.imageSaver.enqueue) # self.plateReaderNavigationController.xPos.connect(self.navigationWidget.label_Xpos.setNum) # self.plateReaderNavigationController.yPos.connect(self.navigationWidget.label_Ypos.setNum) # self.plateReaderNavigationController.zPos.connect(self.navigationWidget.label_Zpos.setNum) self.autofocusController.image_to_display.connect(self.imageDisplayWindow.display_image) # self.plateReadingController.image_to_display.connect(self.imageDisplayWindow.display_image) self.plateReadingController.signal_current_configuration.connect(self.liveControlWidget.set_microscope_mode) self.plateReadingController.image_to_display.connect(self.imageDisplayWindow.display_image) self.liveControlWidget.signal_newExposureTime.connect(self.cameraSettingWidget.set_exposure_time) self.liveControlWidget.signal_newAnalogGain.connect(self.cameraSettingWidget.set_analog_gain) self.liveControlWidget.update_camera_settings() self.microcontroller.set_callback(self.plateReaderNavigationController.update_pos) self.plateReaderNavigationController.signal_homing_complete.connect(self.plateReaderNavigationWidget.slot_homing_complete) self.plateReaderNavigationController.signal_homing_complete.connect(self.plateReaderAcquisitionWidget.slot_homing_complete) self.plateReaderNavigationController.signal_current_well.connect(self.plateReaderNavigationWidget.update_current_location)
def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects if SIMULATION is True: # self.camera = camera.Camera(sn=48910098) self.camera = camera.Camera(sn=17910089) self.microcontroller = microcontroller.Microcontroller_Simulation() else: self.camera = camera.Camera(sn=17910089) self.microcontroller = microcontroller.Microcontroller() self.configurationManager = core.ConfigurationManager() self.streamHandler = core.StreamHandler() self.liveController = core.LiveController(self.camera,self.microcontroller,self.configurationManager) self.navigationController = core.NavigationController(self.microcontroller) #self.autofocusController = core.AutoFocusController(self.camera,self.navigationController,self.liveController) #self.multipointController = core.MultiPointController(self.camera,self.navigationController,self.liveController,self.autofocusController) self.trackingController = core_tracking.TrackingController(self.microcontroller,self.navigationController) self.imageSaver = core.ImageSaver() self.imageDisplay = core.ImageDisplay() ''' # thread self.thread_multiPoint = QThread() self.thread_multiPoint.start() self.multipointController.moveToThread(self.thread_multiPoint) ''' # open the camera # camera start streaming self.camera.open() self.camera.set_software_triggered_acquisition() #self.camera.set_continuous_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget(self.camera,self.liveController) self.liveControlWidget = widgets.LiveControlWidget(self.streamHandler,self.liveController,self.configurationManager) self.navigationWidget = widgets.NavigationWidget(self.navigationController) #self.autofocusWidget = widgets.AutoFocusWidget(self.autofocusController) self.recordingControlWidget = widgets.RecordingWidget(self.streamHandler,self.imageSaver) self.trackingControlWidget = widgets_tracking.TrackingControllerWidget(self.streamHandler,self.trackingController) #self.multiPointWidget = widgets.MultiPointWidget(self.multipointController) self.recordTabWidget = QTabWidget() self.recordTabWidget.addTab(self.recordingControlWidget, "Simple Recording") self.recordTabWidget.addTab(self.trackingControlWidget, "Tracking") #self.recordTabWidget.addTab(self.multiPointWidget, "Multipoint Acquisition") # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget,0,0) layout.addWidget(self.liveControlWidget,1,0) layout.addWidget(self.navigationWidget,2,0) #layout.addWidget(self.autofocusWidget,3,0) layout.addWidget(self.recordTabWidget,4,0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow = core.ImageDisplayWindow('Main Display') self.imageDisplayWindow.show() self.imageDisplayWindow_ThresholdedImage = core.ImageDisplayWindow('Thresholded Image') self.imageDisplayWindow_ThresholdedImage.show() # make connections self.streamHandler.signal_new_frame_received.connect(self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplay.enqueue) self.streamHandler.packet_image_to_write.connect(self.imageSaver.enqueue) self.streamHandler.packet_image_for_tracking.connect(self.trackingController.on_new_frame) self.imageDisplay.image_to_display.connect(self.imageDisplayWindow.display_image) # may connect streamHandler directly to imageDisplayWindow self.navigationController.xPos.connect(self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect(self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect(self.navigationWidget.label_Zpos.setNum)
def __init__(self, is_simulation=False, *args, **kwargs): super().__init__(*args, **kwargs) channels = ['ch 1', 'ch 2'] self.channels = channels self.imageDisplayWindow = {} for i in range(len(channels)): self.imageDisplayWindow[channels[i]] = core.ImageDisplayWindow( draw_crosshairs=True) # load objects self.camera = {} if is_simulation: for i in range(len(channels)): self.camera[channels[i]] = camera.Camera_Simulation( sn=CAMERA_SN[channels[i]], is_global_shutter=True, rotate_image_angle=ROTATE_IMAGE_ANGLE, flip_image=FLIP_IMAGE) self.microcontroller = microcontroller.Microcontroller_Simulation() self.microcontroller2 = microcontroller2.Microcontroller2_Simulation( ) else: for i in range(len(channels)): self.camera[channels[i]] = camera.Camera( sn=CAMERA_SN[channels[i]], is_global_shutter=True, rotate_image_angle=ROTATE_IMAGE_ANGLE, flip_image=FLIP_IMAGE) self.microcontroller = microcontroller.Microcontroller_Simulation() self.microcontroller2 = microcontroller2.Microcontroller2() # open the camera for i in range(len(channels)): self.camera[channels[i]].open() self.camera[channels[i]].set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() # configure the actuators self.microcontroller.configure_actuators() # navigation controller and widget self.navigationController = core.NavigationController( self.microcontroller) self.navigationWidget = widgets.NavigationWidget( self.navigationController) self.configurationManager = {} self.streamHandler = {} self.liveController = {} self.imageSaver = {} self.cameraSettingWidget = {} self.liveControlWidget = {} self.cameraTabWidget = QTabWidget() for i in range(len(channels)): # controllers self.configurationManager[channels[i]] = core.ConfigurationManager( filename=str(Path.home()) + "/configurations_" + channels[i] + ".xml") self.streamHandler[channels[i]] = core.StreamHandler( display_resolution_scaling=DEFAULT_DISPLAY_CROP / 100) self.liveController[channels[i]] = core.LiveController( self.camera[channels[i]], self.microcontroller, self.configurationManager[channels[i]], use_internal_timer_for_hardware_trigger=False) self.imageSaver[channels[i]] = core.ImageSaver( image_format=Acquisition.IMAGE_FORMAT) # widgets self.cameraSettingWidget[ channels[i]] = widgets.CameraSettingsWidget( self.camera[channels[i]], include_gain_exposure_time=False) self.liveControlWidget[channels[i]] = widgets.LiveControlWidget( self.streamHandler[channels[i]], self.liveController[channels[i]], self.configurationManager[channels[i]]) # self.recordingControlWidget[channels[i]] = widgets.RecordingWidget(self.streamHandler[channels[i]],self.imageSaver[channels[i]]) self.cameraTabWidget.addTab(self.liveControlWidget[channels[i]], channels[i]) # self.liveControlWidget[channels[i]].setSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum) # self.liveControlWidget[channels[i]].resize(self.liveControlWidget[channels[i]].minimumSizeHint()) # self.liveControlWidget[channels[i]].adjustSize() self.cameraTabWidget.resize(self.cameraTabWidget.minimumSizeHint()) self.cameraTabWidget.adjustSize() # self.recordTabWidget = QTabWidget() # for i in range(len(channels)): # self.recordTabWidget.addTab(self.recordingControlWidget[channels[i]], "Simple Recording") self.multiCameraRecordingWidget = widgets.MultiCameraRecordingWidget( self.streamHandler, self.imageSaver, self.channels) # trigger control self.triggerControlWidget = widgets.TriggerControlWidget( self.microcontroller2) # layout widgets layout = QVBoxLayout() #layout = QStackedLayout() # layout.addWidget(self.cameraSettingWidget) layout.addWidget(self.cameraTabWidget) layout.addWidget(self.triggerControlWidget) layout.addWidget(self.multiCameraRecordingWidget) # layout.addWidget(self.navigationWidget) # layout.addWidget(self.recordTabWidget) layout.addStretch() # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) # self.centralWidget.setFixedSize(self.centralWidget.minimumSize()) # self.centralWidget.setFixedWidth(self.centralWidget.minimumWidth()) # self.centralWidget.setMaximumWidth(self.centralWidget.minimumWidth()) self.centralWidget.setFixedWidth( self.centralWidget.minimumSizeHint().width()) dock_display = {} for i in range(len(channels)): dock_display[channels[i]] = dock.Dock('Image Display ' + channels[i], autoOrientation=False) dock_display[channels[i]].showTitleBar() dock_display[channels[i]].addWidget( self.imageDisplayWindow[channels[i]].widget) dock_display[channels[i]].setStretch(x=100, y=None) dock_controlPanel = dock.Dock('Controls', autoOrientation=False) # dock_controlPanel.showTitleBar() dock_controlPanel.addWidget(self.centralWidget) dock_controlPanel.setStretch(x=1, y=None) dock_controlPanel.setFixedWidth( dock_controlPanel.minimumSizeHint().width()) main_dockArea = dock.DockArea() for i in range(len(channels)): if i == 0: main_dockArea.addDock(dock_display[channels[i]]) else: main_dockArea.addDock(dock_display[channels[i]], 'right') main_dockArea.addDock(dock_controlPanel, 'right') self.setCentralWidget(main_dockArea) desktopWidget = QDesktopWidget() height_min = 0.9 * desktopWidget.height() width_min = 0.96 * desktopWidget.width() self.setMinimumSize(width_min, height_min) # make connections for i in range(len(channels)): self.streamHandler[channels[i]].signal_new_frame_received.connect( self.liveController[channels[i]].on_new_frame) self.streamHandler[channels[i]].image_to_display.connect( self.imageDisplayWindow[channels[i]].display_image) self.streamHandler[channels[i]].packet_image_to_write.connect( self.imageSaver[channels[i]].enqueue) self.liveControlWidget[channels[i]].signal_newExposureTime.connect( self.cameraSettingWidget[channels[i]].set_exposure_time) self.liveControlWidget[channels[i]].signal_newAnalogGain.connect( self.cameraSettingWidget[channels[i]].set_analog_gain) self.liveControlWidget[channels[i]].update_camera_settings() self.triggerControlWidget.signal_toggle_live.connect( self.liveControlWidget[channels[i]].btn_live.setChecked) self.triggerControlWidget.signal_toggle_live.connect( self.liveControlWidget[channels[i]].toggle_live) self.triggerControlWidget.signal_trigger_mode.connect( self.liveControlWidget[channels[i]].set_trigger_mode) self.triggerControlWidget.signal_trigger_fps.connect( self.liveControlWidget[channels[i]].entry_triggerFPS.setValue) self.camera[channels[i]].set_callback( self.streamHandler[channels[i]].on_new_frame) self.camera[channels[i]].enable_callback() self.navigationController.xPos.connect( self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect( self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect( self.navigationWidget.label_Zpos.setNum)
def __init__(self, is_simulation=False, *args, **kwargs): super().__init__(*args, **kwargs) # load window if ENABLE_TRACKING: self.imageDisplayWindow = core.ImageDisplayWindow( draw_crosshairs=True) self.imageDisplayWindow.show_ROI_selector() else: self.imageDisplayWindow = core.ImageDisplayWindow( draw_crosshairs=True) self.imageArrayDisplayWindow = core.ImageArrayDisplayWindow() # self.imageDisplayWindow.show() # self.imageArrayDisplayWindow.show() # image display windows self.imageDisplayTabs = QTabWidget() self.imageDisplayTabs.addTab(self.imageDisplayWindow.widget, "Live View") self.imageDisplayTabs.addTab(self.imageArrayDisplayWindow.widget, "Multichannel Acquisition") # load objects if is_simulation: self.camera = camera.Camera_Simulation( rotate_image_angle=ROTATE_IMAGE_ANGLE, flip_image=FLIP_IMAGE) self.microcontroller = microcontroller.Microcontroller_Simulation() else: self.camera = camera.Camera(rotate_image_angle=ROTATE_IMAGE_ANGLE, flip_image=FLIP_IMAGE) self.microcontroller = microcontroller.Microcontroller() # configure the actuators self.microcontroller.configure_actuators() self.configurationManager = core.ConfigurationManager() self.streamHandler = core.StreamHandler( display_resolution_scaling=DEFAULT_DISPLAY_CROP / 100) self.liveController = core.LiveController(self.camera, self.microcontroller, self.configurationManager) self.navigationController = core.NavigationController( self.microcontroller) self.autofocusController = core.AutoFocusController( self.camera, self.navigationController, self.liveController) self.multipointController = core.MultiPointController( self.camera, self.navigationController, self.liveController, self.autofocusController, self.configurationManager) if ENABLE_TRACKING: self.trackingController = core.TrackingController( self.camera, self.microcontroller, self.navigationController, self.configurationManager, self.liveController, self.autofocusController, self.imageDisplayWindow) self.imageSaver = core.ImageSaver( image_format=Acquisition.IMAGE_FORMAT) self.imageDisplay = core.ImageDisplay() # open the camera # camera start streaming self.camera.open() # self.camera.set_reverse_x(CAMERA_REVERSE_X) # these are not implemented for the cameras in use # self.camera.set_reverse_y(CAMERA_REVERSE_Y) # these are not implemented for the cameras in use self.camera.set_software_triggered_acquisition( ) #self.camera.set_continuous_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget( self.camera, include_gain_exposure_time=False) self.liveControlWidget = widgets.LiveControlWidget( self.streamHandler, self.liveController, self.configurationManager) self.navigationWidget = widgets.NavigationWidget( self.navigationController) self.dacControlWidget = widgets.DACControWidget(self.microcontroller) self.autofocusWidget = widgets.AutoFocusWidget( self.autofocusController) self.recordingControlWidget = widgets.RecordingWidget( self.streamHandler, self.imageSaver) if ENABLE_TRACKING: self.trackingControlWidget = widgets.TrackingControllerWidget( self.trackingController, self.configurationManager, show_configurations=TRACKING_SHOW_MICROSCOPE_CONFIGURATIONS) self.multiPointWidget = widgets.MultiPointWidget( self.multipointController, self.configurationManager) self.recordTabWidget = QTabWidget() if ENABLE_TRACKING: self.recordTabWidget.addTab(self.trackingControlWidget, "Tracking") self.recordTabWidget.addTab(self.recordingControlWidget, "Simple Recording") self.recordTabWidget.addTab(self.multiPointWidget, "Multipoint Acquisition") # layout widgets layout = QVBoxLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget) layout.addWidget(self.liveControlWidget) layout.addWidget(self.navigationWidget) if SHOW_DAC_CONTROL: layout.addWidget(self.dacControlWidget) layout.addWidget(self.autofocusWidget) layout.addWidget(self.recordTabWidget) layout.addStretch() # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) # self.centralWidget.setFixedSize(self.centralWidget.minimumSize()) # self.centralWidget.setFixedWidth(self.centralWidget.minimumWidth()) # self.centralWidget.setMaximumWidth(self.centralWidget.minimumWidth()) self.centralWidget.setFixedWidth( self.centralWidget.minimumSizeHint().width()) if SINGLE_WINDOW: dock_display = dock.Dock('Image Display', autoOrientation=False) dock_display.showTitleBar() dock_display.addWidget(self.imageDisplayTabs) dock_display.setStretch(x=100, y=None) dock_controlPanel = dock.Dock('Controls', autoOrientation=False) # dock_controlPanel.showTitleBar() dock_controlPanel.addWidget(self.centralWidget) dock_controlPanel.setStretch(x=1, y=None) dock_controlPanel.setFixedWidth( dock_controlPanel.minimumSizeHint().width()) main_dockArea = dock.DockArea() main_dockArea.addDock(dock_display) main_dockArea.addDock(dock_controlPanel, 'right') self.setCentralWidget(main_dockArea) desktopWidget = QDesktopWidget() height_min = 0.9 * desktopWidget.height() width_min = 0.96 * desktopWidget.width() self.setMinimumSize(width_min, height_min) else: self.setCentralWidget(self.centralWidget) self.tabbedImageDisplayWindow = QMainWindow() self.tabbedImageDisplayWindow.setCentralWidget( self.imageDisplayTabs) self.tabbedImageDisplayWindow.setWindowFlags( self.windowFlags() | Qt.CustomizeWindowHint) self.tabbedImageDisplayWindow.setWindowFlags( self.windowFlags() & ~Qt.WindowCloseButtonHint) desktopWidget = QDesktopWidget() width = 0.96 * desktopWidget.height() height = width self.tabbedImageDisplayWindow.setFixedSize(width, height) self.tabbedImageDisplayWindow.show() # make connections self.streamHandler.signal_new_frame_received.connect( self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplay.enqueue) self.streamHandler.packet_image_to_write.connect( self.imageSaver.enqueue) # self.streamHandler.packet_image_for_tracking.connect(self.trackingController.on_new_frame) self.imageDisplay.image_to_display.connect( self.imageDisplayWindow.display_image ) # may connect streamHandler directly to imageDisplayWindow self.navigationController.xPos.connect( self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect( self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect( self.navigationWidget.label_Zpos.setNum) if ENABLE_TRACKING: self.navigationController.signal_joystick_button_pressed.connect( self.trackingControlWidget.slot_joystick_button_pressed) else: self.navigationController.signal_joystick_button_pressed.connect( self.autofocusController.autofocus) self.autofocusController.image_to_display.connect( self.imageDisplayWindow.display_image) self.multipointController.image_to_display.connect( self.imageDisplayWindow.display_image) self.multipointController.signal_current_configuration.connect( self.liveControlWidget.set_microscope_mode) self.multipointController.image_to_display_multi.connect( self.imageArrayDisplayWindow.display_image) self.liveControlWidget.signal_newExposureTime.connect( self.cameraSettingWidget.set_exposure_time) self.liveControlWidget.signal_newAnalogGain.connect( self.cameraSettingWidget.set_analog_gain) self.liveControlWidget.update_camera_settings()
def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) # load objects self.camera = camera.Camera() self.microcontroller = microcontroller.Microcontroller(serialport="COM12", is_homing=False) self.configurationManager = core.ConfigurationManager() self.streamHandler = core.StreamHandler() self.liveController = core.LiveController(self.camera,self.microcontroller,self.configurationManager) self.imageSaver = core.ImageSaver() self.imageDisplay = core.ImageDisplay() #self.PDAFController = core_PDAF.PDAFController() self.navigationController = core.NavigationController(self.microcontroller) self.autofocusController = core.AutoFocusController(self.camera,self.navigationController,self.liveController) self.trackingController = core.TrackingController(self.microcontroller,self.navigationController) # open the camera # camera start streaming self.camera.open() self.camera.set_software_triggered_acquisition() self.camera.set_callback(self.streamHandler.on_new_frame) self.camera.enable_callback() # load widgets self.cameraSettingWidget = widgets.CameraSettingsWidget(self.camera,self.liveController) self.liveControlWidget = widgets.LiveControlWidget(self.streamHandler,self.liveController,self.configurationManager) self.recordingControlWidget = widgets.RecordingWidget(self.streamHandler,self.imageSaver) self.navigationWidget = widgets.NavigationWidget(self.navigationController) self.autofocusWidget = widgets.AutoFocusWidget(self.autofocusController) self.trackingControlWidget = widgets.TrackingControllerWidget(self.streamHandler,self.trackingController) # layout widgets layout = QGridLayout() #layout = QStackedLayout() layout.addWidget(self.cameraSettingWidget,0,0) layout.addWidget(self.liveControlWidget,1,0) layout.addWidget(self.navigationWidget,2,0) layout.addWidget(self.autofocusWidget,3,0) layout.addWidget(self.recordingControlWidget,4,0) # transfer the layout to the central widget self.centralWidget = QWidget() self.centralWidget.setLayout(layout) self.setCentralWidget(self.centralWidget) # load window self.imageDisplayWindow = core.ImageDisplayWindow() self.imageDisplayWindow.show() # make connections self.streamHandler.signal_new_frame_received.connect(self.liveController.on_new_frame) self.streamHandler.image_to_display.connect(self.imageDisplay.enqueue) self.streamHandler.packet_image_to_write.connect(self.imageSaver.enqueue) self.streamHandler.packet_image_for_tracking.connect(self.trackingController.on_new_frame) self.imageDisplay.image_to_display.connect(self.imageDisplayWindow.display_image) # may connect streamHandler directly to imageDisplayWindow self.liveControlWidget.signal_newExposureTime.connect(self.cameraSettingWidget.set_exposure_time) self.liveControlWidget.signal_newAnalogGain.connect(self.cameraSettingWidget.set_analog_gain) self.liveControlWidget.update_camera_settings() self.navigationController.xPos.connect(self.navigationWidget.label_Xpos.setNum) self.navigationController.yPos.connect(self.navigationWidget.label_Ypos.setNum) self.navigationController.zPos.connect(self.navigationWidget.label_Zpos.setNum) self.autofocusController.image_to_display.connect(self.imageDisplayWindow.display_image)