def convertInputStep(self):
printLicense()
self.info('Wrinting pytom xml file: ' + self.volXml)
volsDir = self._getExtraPath('inputVolumes')
pwutils.makePath(volsDir)
writeSetOfVolumes(self.inputVolumes.get(), self.volXml, volsDir)
if self.provideReferences:
ih = em.ImageHandler()
self.info('Converting input references')
for r, vol in enumerate(self.inputReferences.get()):
refFn = self._getExtraPath('reference_%02d.mrc' % (r+1))
ih.convert(vol, refFn)
def convertInputStep(self):
printLicense()
self.info('Writing pytom xml file: ' + self.volXml)
volsDir = self._getExtraPath('inputVolumes')
pwutils.makePath(volsDir)
writeSetOfVolumes(self.inputVolumes.get(), self.volXml, volsDir)
ih = em.ImageHandler()
self.info('Converting input reference to: ' + self.refVol)
ih.convert(self.inputReference.get(), self.refVol)
self.info('Converting input mask to: ' + self.maskVol)
ih.convert(self.alignmentMask.get(), self.maskVol)
