def convertInputStep(self): printLicense() self.info('Wrinting pytom xml file: ' + self.volXml) volsDir = self._getExtraPath('inputVolumes') pwutils.makePath(volsDir) writeSetOfVolumes(self.inputVolumes.get(), self.volXml, volsDir) if self.provideReferences: ih = em.ImageHandler() self.info('Converting input references') for r, vol in enumerate(self.inputReferences.get()): refFn = self._getExtraPath('reference_%02d.mrc' % (r+1)) ih.convert(vol, refFn)
def convertInputStep(self): printLicense() self.info('Writing pytom xml file: ' + self.volXml) volsDir = self._getExtraPath('inputVolumes') pwutils.makePath(volsDir) writeSetOfVolumes(self.inputVolumes.get(), self.volXml, volsDir) ih = em.ImageHandler() self.info('Converting input reference to: ' + self.refVol) ih.convert(self.inputReference.get(), self.refVol) self.info('Converting input mask to: ' + self.maskVol) ih.convert(self.alignmentMask.get(), self.maskVol)