def __init__(self, **kwarg):
for s in self.__slots__:
setattr(self, s, None)
update(self, **kwarg)
def __init__(self, **kwargs) :
""" Create a new LogoOptions instance.
>>> L = LogoOptions(logo_title = "Some Title String")
>>> L.show_yaxis = False
>>> repr(L)
"""
self.alphabet = None
self.creator_text = release_description
self.logo_title = ""
self.logo_label = ""
self.stacks_per_line = 40
self.unit_name = "bits"
self.show_yaxis = True
# yaxis_lable default depends on other settings. See LogoFormat
self.yaxis_label = None
self.yaxis_tic_interval = 1.
self.yaxis_minor_tic_ratio = 5
self.yaxis_scale = None
self.show_xaxis = True
self.xaxis_label = ""
self.xaxis_tic_interval =1
self.rotate_numbers = False
self.number_interval = 5
self.show_ends = False
self.annotate = None
self.show_fineprint = True
self.fineprint = "WebLogo "+__version__
self.show_boxes = False
self.shrink_fraction = 0.5
self.show_errorbars = True
self.errorbar_fraction = 0.90
self.errorbar_width_fraction = 0.25
self.errorbar_gray = 0.75
self.resolution = 96. # Dots per inch
self.default_color = Color.by_name("black")
self.color_scheme = None
#self.show_color_key = False # NOT yet implemented
self.debug = False
self.logo_margin = 2
self.stroke_width = 0.5
self.tic_length = 5
self.stack_width = std_sizes["medium"]
self.stack_aspect_ratio = 5
self.stack_margin = 0.5
self.pad_right = False
self.small_fontsize = 6
self.fontsize = 10
self.title_fontsize = 12
self.number_fontsize = 8
self.text_font = "ArialMT"
self.logo_font = "Arial-BoldMT"
self.title_font = "ArialMT"
self.first_index = 1
self.logo_start = None
self.logo_end=None
self.scale_width = True
self.reverse_stacks = True # If true, draw stacks with largest letters on top.
from corebio.utils import update
update(self, **kwargs)
def __init__(self, **kwarg) :
for s in self.__slots__ : setattr(self, s, None)
update(self, **kwarg)
