def sync_status(limit=100000):
# Stream through all samples.
sample_count = Sample.objects.count()
for index in range(0, sample_count, limit):
vals = Sample.objects.order_by('id', '-statuses__status_code').distinct('id').values_list('id', 'status_code', 'statuses__id', 'statuses__status_code')[index:index+limit]
# Pull all mismatching values.
ids = []
status_codes = []
# status_ids = []
for sample_id, status_code, status_id, latest_status_code in vals:
if status_code != latest_status_code:
ids.append(sample_id)
status_codes.append(latest_status_code)
# status_ids.append(status_id)
# Sync using a bulk update.
if ids:
pg_bulk_update(Sample, 'id', 'status_code', list(ids), list(status_codes))
# pg_bulk_update(Sample, 'id', 'status_id', list(ids), list(status_ids))
print 'Synced %s out of %s samples at %s'%(len(ids), limit, index)
def make_fake_data(samples_to_make=1000, batch_threshold=1000, delete_existing=True, make_statuses=True, years=1):
"""Makes mock data for testing performance. Optionally, resets db.
"""
if delete_existing:
Sample.objects.all().delete()
print "Deleted existing"
# Make up a set of
offset = samples_to_make-samples_to_make/52/years
# Create all the samples.
samples = []
for barcode in range(samples_to_make):
sample = Sample()
sample.barcode = str(barcode)
sample.created = now()
sample.production = True
samples.append(sample)
if len(samples) >= batch_threshold:
Sample.objects.bulk_create(samples)
del samples[:]
print "Made %s samples."%Sample.objects.count()
if samples:
Sample.objects.bulk_create(samples)
print "Finished making %s samples."%Sample.objects.count()
if not make_statuses:
return
# Pull all ids for samples.
sample_ids = Sample.objects.values_list('id', flat=True)
# Create all the statuses.
offset = len(sample_ids)-len(sample_ids)/52/years
statuses = []
for sample in sample_ids[:offset]:
statuses.append(SampleStatus(sample_id=sample, status_code=SampleStatus.RECEIVED, created=now()))
statuses.append(SampleStatus(sample_id=sample, status_code=SampleStatus.LAB, created=now()))
statuses.append(SampleStatus(sample_id=sample, status_code=SampleStatus.COMPLETE, created=now()))
if len(statuses) >= batch_threshold:
SampleStatus.objects.bulk_create(statuses)
del statuses[:]
for sample in sample_ids[offset:]:
statuses.append(SampleStatus(sample_id=sample, status_code=SampleStatus.RECEIVED, created=now()))
statuses.append(SampleStatus(sample_id=sample, status_code=SampleStatus.LAB, created=now()))
if len(statuses) >= batch_threshold:
SampleStatus.objects.bulk_create(statuses)
del statuses[:]
print "Made %s statuses."%SampleStatus.objects.count()
if statuses:
SampleStatus.objects.bulk_create(statuses)
print "Finished making %s statuses."%SampleStatus.objects.count()
# Set all the statuses to lab.
vals = (Sample.objects
.filter(statuses__status_code=SampleStatus.LAB)
.values_list('id', 'statuses__id'))
sample_ids, sample_status_ids = zip(*vals)
pg_bulk_update(Sample, 'id', 'latest_status', list(sample_ids), list(sample_status_ids))
# Set all the statuses to completed.
vals = (Sample.objects
.filter(statuses__status_code=SampleStatus.COMPLETE)
.values_list('id', 'statuses__id'))
sample_ids, sample_status_ids = zip(*vals)
pg_bulk_update(Sample, 'id', 'latest_status', list(sample_ids), list(sample_status_ids))
