def get_files(workflow_spec_id=None, workflow_id=None, form_field_key=None):
if all(v is None for v in [workflow_spec_id, workflow_id, form_field_key]):
raise ApiError('missing_parameter',
'Please specify either a workflow_spec_id or a '
'workflow_id with an optional form_field_key')
file_models = FileService.get_files(workflow_spec_id=workflow_spec_id,
workflow_id=workflow_id,
irb_doc_code=form_field_key)
files = (to_file_api(model) for model in file_models)
return FileSchema(many=True).dump(files)
def get_files(workflow_id=None, form_field_key=None, study_id=None):
if workflow_id is None:
raise ApiError(
'missing_parameter',
'Please specify a workflow_id with an optional form_field_key')
if study_id is not None:
file_models = FileService.get_files_for_study(
study_id=study_id, irb_doc_code=form_field_key)
else:
file_models = FileService.get_files(workflow_id=workflow_id,
irb_doc_code=form_field_key)
files = (to_file_api(model) for model in file_models)
return FileSchema(many=True).dump(files)
def set_reference_file(name):
"""Uses the file service to manage reference-files. They will be used in script tasks to compute values."""
if 'file' not in connexion.request.files:
raise ApiError('invalid_file',
'Expected a file named "file" in the multipart form request', status_code=400)
file = connexion.request.files['file']
name_extension = FileService.get_extension(name)
file_extension = FileService.get_extension(file.filename)
if name_extension != file_extension:
raise ApiError('invalid_file_type',
"The file you uploaded has an extension '%s', but it should have an extension of '%s' " %
(file_extension, name_extension))
file_models = FileService.get_files(name=name, is_reference=True)
if len(file_models) == 0:
file_model = FileService.add_reference_file(name, file.content_type, file.stream.read())
else:
file_model = file_models[0]
FileService.update_file(file_models[0], file.stream.read(), file.content_type)
return FileSchema().dump(to_file_api(file_model))
def get_reference_files():
results = FileService.get_files(is_reference=True)
files = (to_file_api(model) for model in results)
return FileSchema(many=True).dump(files)