Python HHProfileParser Examples

Example #1

File: __init__.py Project: UCL-RITS/CSB-structural-bio-tools

class TestPseudocountBuilder(test.Case):
    def setUp(self):

        super(TestPseudocountBuilder, self).setUp()
        self.hmm = HHProfileParser(
            self.config.getTestFile('d1nz0a_.hhm')).parse()

    def runTest(self):
        self.hmm.add_emission_pseudocounts()
        self.hmm.convert_scores(ScoreUnits.LogScales)
        self.hmm.add_transition_pseudocounts()

Example #2

File: __init__.py Project: jakebarnwell/PythonGenerator

class TestPseudocountBuilder(test.Case):
    
    def setUp(self):
        
        super(TestPseudocountBuilder, self).setUp()
        self.hmm = HHProfileParser(self.config.getTestFile('d1nz0a_.hhm')).parse()
        
    def runTest(self):
        self.hmm.add_emission_pseudocounts()
        self.hmm.convert_scores(ScoreUnits.LogScales)
        self.hmm.add_transition_pseudocounts()

Example #3

File: __init__.py Project: UCL-RITS/CSB-structural-bio-tools

    def setUp(self):

        super(TestPseudocountBuilder, self).setUp()
        self.hmm = HHProfileParser(
            self.config.getTestFile('d1nz0a_.hhm')).parse()

Example #4

File: __init__.py Project: jakebarnwell/PythonGenerator

 def setUp(self):
     
     super(TestPseudocountBuilder, self).setUp()
     self.hmm = HHProfileParser(self.config.getTestFile('d1nz0a_.hhm')).parse()