def get_next_item(event_id, question_list):
for question_ in question_list:
item_ = get_question_item(self._domain_name, event_id,
question_)
if item_:
return item_
return None
def subject_rows(self):
audit_log_id = 0 # To exclude audit logs, set `custom.openclinica.const.AUDIT_LOGS = False`
for case in self.get_subject_cases():
subject = Subject(getattr(case, CC_SUBJECT_KEY), getattr(case, CC_STUDY_SUBJECT_ID), self.domain)
for form in originals_first(case.get_forms()):
updates = form.form['case'].get('update', {})
if updates:
for question, answer in updates.iteritems():
item = get_question_item(self.domain, form.xmlns, question)
if item is None:
# This is a CommCare-only question or form
continue
audit_log_id += 1
subject.add_item(item, form, question, oc_format_date(answer), audit_log_id)
subject.close_form(form)
yield subject
def add_data(self, data, form, event_case, audit_log_id_ref):
def get_next_item(event_id, question_list):
for question_ in question_list:
item_ = get_question_item(self._domain_name, event_id,
question_)
if item_:
return item_
return None
event_id = getattr(event_case, 'event_type')
# If a CommCare form is an OpenClinica repeating item group, then we would need to add a new item
# group.
for key, value in six.iteritems(data):
if key in _reserved_keys:
continue
if isinstance(value, list):
# Repeat group
# NOTE: We need to assume that repeat groups can't be edited in later form submissions
item = get_next_item(event_id, value)
if item is None:
# None of the questions in this group are OpenClinica items
continue
self.add_item_group(item, form)
for v in value:
if not isinstance(v, dict):
raise OpenClinicaIntegrationError(
'CommCare question value is an unexpected data type. Form XMLNS: "{}"'
.format(form.xmlns))
self.add_data(v, form, event_case, audit_log_id_ref)
elif isinstance(value, dict):
# Group
self.add_data(value, form, event_case, audit_log_id_ref)
else:
# key is a question and value is its answer
item = get_question_item(self._domain_name, event_id, key)
if item is None:
# This is a CommCare-only question or form
continue
case_id = event_case.get_id
self.add_item(item, form, case_id, key, value,
audit_log_id_ref)
def add_data(self, data, form, audit_log_id_ref):
def get_next_item(question_list):
for question_ in question_list:
item_ = get_question_item(self._domain, form.xmlns, question_)
if item_:
return item_
return None
# If a CommCare form is an OpenClinica repeating item group, then we would need to add a new item
# group. This isn't relevant for this project.
# if form.xmlns in REPEATING_ITEM_GROUP_FORMS:
# pass
for key, value in data.iteritems():
if key in _reserved_keys:
continue
if isinstance(value, list):
# Repeat group
# NOTE: We need to assume that repeat groups can't be edited in later form submissions
item = get_next_item(value)
if item is None:
# None of the questions in this group are OpenClinica items
continue
self.add_item_group(item, form)
for v in value:
# TODO: More testing
if not isinstance(v, dict):
raise OpenClinicaIntegrationError(
'CommCare question value is an unexpected data type. Form XMLNS: "{}"'.format(
form.xmlns))
self.add_data(v, form, audit_log_id_ref)
elif isinstance(value, dict):
# Group
self.add_data(value, form, audit_log_id_ref)
else:
# key is a question and value is its answer
item = get_question_item(self._domain, form.xmlns, key)
if item is None:
# This is a CommCare-only question or form
continue
self.add_item(item, form, key, oc_format_date(value), audit_log_id_ref)
def add_data(self, data, form, event_case, audit_log_id_ref):
def get_next_item(event_id, question_list):
for question_ in question_list:
item_ = get_question_item(self._domain_name, event_id, question_)
if item_:
return item_
return None
event_id = getattr(event_case, 'event_type')
# If a CommCare form is an OpenClinica repeating item group, then we would need to add a new item
# group.
for key, value in six.iteritems(data):
if key in _reserved_keys:
continue
if isinstance(value, list):
# Repeat group
# NOTE: We need to assume that repeat groups can't be edited in later form submissions
item = get_next_item(event_id, value)
if item is None:
# None of the questions in this group are OpenClinica items
continue
self.add_item_group(item, form)
for v in value:
if not isinstance(v, dict):
raise OpenClinicaIntegrationError(
'CommCare question value is an unexpected data type. Form XMLNS: "{}"'.format(
form.xmlns))
self.add_data(v, form, event_case, audit_log_id_ref)
elif isinstance(value, dict):
# Group
self.add_data(value, form, event_case, audit_log_id_ref)
else:
# key is a question and value is its answer
item = get_question_item(self._domain_name, event_id, key)
if item is None:
# This is a CommCare-only question or form
continue
case_id = event_case.get_id
self.add_item(item, form, case_id, key, value, audit_log_id_ref)
def get_next_item(question_list):
for question_ in question_list:
item_ = get_question_item(self._domain, form.xmlns, question_)
if item_:
return item_
return None
def get_next_item(event_id, question_list):
for question_ in question_list:
item_ = get_question_item(self._domain_name, event_id, question_)
if item_:
return item_
return None
