Python FastaQualReader Examples

Programming Language: Python

Namespace/Package Name: cutadapt.seqio

Class/Type: FastaQualReader

Examples at hotexamples.com: 2

Python FastaQualReader - 2 examples found. These are the top rated real world Python examples of cutadapt.seqio.FastaQualReader extracted from open source projects. You can rate examples to help us improve the quality of examples.

Frequently Used Methods

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FastaQualReader(2)

Frequently Used Methods

FastaQualReader (2)

Example #1

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 def test_invalid_quality_value(self):
     fasta = StringIO(">name\nACG")
     qual = StringIO(">name\n3 xx 7")
     list(FastaQualReader(fasta, qual))

Example #2

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 def test_mismatching_read_names(self):
     fasta = StringIO(">name\nACG")
     qual = StringIO(">nome\n3 5 7")
     list(FastaQualReader(fasta, qual))