def testRequiredFields(self):
required = MicrobiomeAssayPrep.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(len(required) > 0,
"required_fields() did not return empty value.")
def testRequiredFields(self):
""" Test the required_fields() static method. """
required = MicrobiomeAssayPrep.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(len(required) > 0,
"required_fields() did not return empty value.")
def set_logging():
""" Setup logging. """
root = logging.getLogger()
root.setLevel(logging.DEBUG)
ch = logging.StreamHandler(sys.stdout)
ch.setLevel(logging.DEBUG)
formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s')
ch.setFormatter(formatter)
root.addHandler(ch)
set_logging()
session = iHMPSession(username, password)
print("Required fields: ")
print(MicrobiomeAssayPrep.required_fields())
prep = MicrobiomeAssayPrep()
prep.comment = "Hello world!"
prep.pride_id = "PRIDE ID"
prep.center = "the center"
prep.contact = "first name last name"
prep.sample_name = "name of the sample"
prep.experiment_type = "PRIDE:0000429, Shotgun proteomics"
prep.prep_id = "the prep id"
prep.storage_duration = 30
prep.study = "prediabetes"
prep.title = "the title"
# Optional properties
import json
import logging
from cutlass import MicrobiomeAssayPrep
from cutlass import iHMPSession
from pprint import pprint
import tempfile
import sys
username = "******"
password = "******"
session = iHMPSession(username, password)
print("Required fields: ")
print(MicrobiomeAssayPrep.required_fields())
prep = MicrobiomeAssayPrep()
prep.comment = "Hello world!"
prep.pride_id = "PRIDE ID"
prep.center = "the center"
prep.contact = "first name last name"
prep.sample_name = "name of the sample"
prep.experiment_type = "PRIDE:0000429, Shotgun proteomics"
prep.prep_id = "the prep id"
prep.storage_duration = 30
prep.study = "prediabetes"
prep.title = "the title"
