def threejs_offline_scripts(self):
"""
Three.js scripts for the IPython command line
OUTPUT:
String containing script tags
EXAMPLES::
sage: from sage.repl.rich_output.backend_ipython import BackendIPythonCommandline
sage: backend = BackendIPythonCommandline()
sage: backend.threejs_offline_scripts()
'...<script ...</script>...'
"""
from sage.env import SAGE_SHARE
scripts = [
os.path.join(SAGE_SHARE, 'threejs', script)
for script in ['three.min.js', 'OrbitControls.js']
]
if sys.platform == 'cygwin':
import cygwin
scripts = [cygwin.cygpath(script, 'w') for script in scripts]
return '\n'.join('<script src="{0}"></script>'.format(script)
for script in scripts)
def add_torrent(self, magnet):
"""
Initialize settings, set magnet->torrent dir to work_dir
"""
self.set_setting("torrents_start_stopped", "false")
torrent_dir = self.work_dir if sys.platform != "cygwin" else cygpath(
self.work_dir, "w")
"""
Add torrent from url. To get the torrent info the torrent has to be started then immediately stopped and files deleted.
"""
params = [("action", "add-url"), ("s", magnet)]
add_action = self._apirequest(params)
torrent_info = self.parse_magnet(magnet)
torrent_hash = torrent_info["hash"]
torrent_files = self.get_files(torrent_hash)
self.start_torrent(torrent_hash)
while not torrent_files or not torrent_files[1]:
torrent_files = self.get_files(torrent_hash)
time.sleep(.5)
self.remove_torrent(torrent_hash, True)
tor_file = open(
os.path.join(self.work_dir, torrent_info["dn"] + ".torrent"), "rb")
self.set_setting("torrents_start_stopped", "true")
params = [("action", "add-file")]
self._apirequest(params, "torrent_file", tor_file)
self.prioritize_download(torrent_hash)
return torrent_hash
def threejs_offline_scripts(self):
"""
Three.js scripts for the IPython command line
OUTPUT:
String containing script tags
EXAMPLES::
sage: from sage.repl.rich_output.backend_ipython import BackendIPythonCommandline
sage: backend = BackendIPythonCommandline()
sage: backend.threejs_offline_scripts()
'...<script ...</script>...'
"""
from sage.env import SAGE_SHARE
scripts = [os.path.join(SAGE_SHARE, 'threejs', script)
for script in ['three.min.js', 'OrbitControls.js']]
if sys.platform == 'cygwin':
import cygwin
scripts = [cygwin.cygpath(script, 'w') for script in scripts]
return '\n'.join('<script src="{0}"></script>'.format(script)
for script in scripts)
def export_image(
self,
targetfile,
datafile, #name (path) of data file Jmol can read or script file telling it what to read or load
datafile_cmd='script', #"script" or "load"
image_type='PNG', #PNG, JPG, GIF
figsize=5,
**kwds):
r"""
This executes JmolData.jar to make an image file.
INPUT:
- targetfile -- the full path to the file where the image
should be written.
- datafile -- full path to the data file Jmol can read or
text of a script telling Jmol what to read or load.
If it is a script and the platform is cygwin, the filenames in
the script should be in native windows format.
- datafile_cmd -- (default ``'script'``) ``'load'`` or ``'script'``
should be ``"load"`` for a data file.
- image_type -- (default ``"PNG"``) ``'PNG'`` ``'JPG'`` or ``'GIF'``
- figsize -- number (default 5) equal to (pixels/side)/100
OUTPUT:
Image file, .png, .gif or .jpg (default .png)
.. note::
Examples will generate an error message if a functional Java Virtual Machine (JVM)
is not installed on the machine the Sage instance is running on.
.. warning::
Programmers using this module should check that the JVM is
available before making calls to avoid the user getting
error messages. Check for the JVM using the function
:meth:`is_jvm_available`, which returns True if a JVM is available.
EXAMPLES:
Use Jmol to load a pdb file containing some DNA from a web data
base and make an image of the DNA. If you execute this in the
notebook, the image will appear in the output cell::
sage: from sage.interfaces.jmoldata import JmolData
sage: JData = JmolData()
sage: script = "load =1lcd;display DNA;moveto 0.0 { -473 -713 -518 59.94} 100.0 0.0 0.0 {21.17 26.72 27.295} 27.544636 {0.0 0.0 0.0} -25.287832 64.8414 0.0;"
sage: testfile = tmp_filename(ext="DNA.png")
sage: JData.export_image(targetfile=testfile,datafile=script,image_type="PNG") # optional -- java internet
sage: print(os.path.exists(testfile)) # optional -- java internet
True
Use Jmol to save an image of a 3-D object created in Sage.
This method is used internally by plot3d to generate static images.
This example doesn't have correct scaling::
sage: from sage.interfaces.jmoldata import JmolData
sage: JData = JmolData()
sage: D = dodecahedron()
sage: from sage.misc.misc import SAGE_TMP
sage: archive_name = os.path.join(SAGE_TMP, "archive.jmol.zip")
sage: D.export_jmol(archive_name) #not scaled properly...need some more steps.
sage: archive_native = archive_name
sage: import sys
sage: if sys.platform == 'cygwin':
....: import cygwin
....: archive_native = cygwin.cygpath(archive_native, 'w')
sage: script = 'set defaultdirectory "{0}"\n script SCRIPT\n'.format(archive_native)
sage: testfile = os.path.join(SAGE_TMP, "testimage.png")
sage: JData.export_image(targetfile=testfile, datafile=script, image_type="PNG") # optional -- java
sage: print(os.path.exists(testfile)) # optional -- java
True
"""
# Set up paths, file names and scripts
jmolpath = os.path.join(SAGE_LOCAL, "share", "jmol", "JmolData.jar")
target_native = targetfile
if sys.platform == 'cygwin':
import cygwin
jmolpath = cygwin.cygpath(jmolpath, 'w')
target_native = cygwin.cygpath(target_native, 'w')
if datafile_cmd != 'script':
datafile = cygwin.cygpath(datafile, 'w')
launchscript = ""
if (datafile_cmd != 'script'):
launchscript = "load "
launchscript = launchscript + datafile
imagescript = 'write {} {!r}\n'.format(image_type, target_native)
size_arg = "%sx%s" % (figsize * 100, figsize * 100)
# Scratch file for Jmol errors
scratchout = tmp_filename(ext=".txt")
with open(scratchout, 'w') as jout:
# Now call the java application and write the file.
env = dict(os.environ)
env['LC_ALL'] = 'C'
env['LANG'] = 'C'
subprocess.call([
"java", "-Xmx512m", "-Djava.awt.headless=true", "-jar",
jmolpath, "-iox", "-g", size_arg, "-J", launchscript, "-j",
imagescript
],
stdout=jout,
stderr=jout,
env=env)
if not os.path.isfile(targetfile):
raise RuntimeError(
"Jmol failed to create file %s, see %s for details" %
(repr(targetfile), repr(scratchout)))
os.unlink(scratchout)
def normpath(p):
return 'file:///' + cygwin.cygpath(p, 'w').replace('\\', '/')