def testCustomTableAbsent(self):
cysbar._loadHydroChargeFile("../data/test/hydropathy_charge.csv")
l, h, c = cysbar._calcStats("AD")
self.assertEqual("2", l)
self.assertEqual("1.00000", h)
self.assertEqual("5.0", c)
def testZeroCharge(self):
l, h, c = cysbar._calcStats("DKDK")
self.assertEqual("4", l)
self.assertEqual("-3.70000", h)
self.assertEqual("0.0", c)
def testNoCharge(self):
l, h, c = cysbar._calcStats("MMM")
self.assertEqual("3", l)
self.assertEqual("1.90000", h)
self.assertEqual("0.0", c)
def testZeroHydro(self):
l, h, c = cysbar._calcStats("RIRI")
self.assertEqual("4", l)
self.assertEqual("0.00000", h)
self.assertEqual("2.0", c)
def testNoHydro(self):
l, h, c = cysbar._calcStats("CCC")
self.assertEqual("3", l)
self.assertEqual("1E-100", h)
self.assertEqual("1E-100", c)
def test1(self):
l, h, c = cysbar._calcStats("RDESQ")
self.assertEqual("5", l)
self.assertEqual("-3.16000", h)
self.assertEqual("-1.0", c)
