def __init__(self, spiketimes, Name, Parent = None, Description = ""):
nineml_daetools_bridge.__init__(self, Name, None, Parent, Description)
# A dummy variable
self.event = daet.daeVariable("event", daet.time_t, self, "")
# Add one 'send' event port
self.spikeoutput = daet.daeEventPort("spikeoutput", daet.eOutletPort, self, "Spike outlet event port")
self.nineml_event_ports.append(self.spikeoutput)
# A list of spike event times
self.spiketimes = list(spiketimes)
def __init__(self, spiketimes, Name, Parent=None, Description=""):
nineml_daetools_bridge.__init__(self, Name, None, Parent, Description)
# A dummy variable
self.event = daet.daeVariable("event", daet.time_t, self, "")
# Add one 'send' event port
self.spikeoutput = daet.daeEventPort("spikeoutput", daet.eOutletPort,
self, "Spike outlet event port")
self.nineml_event_ports.append(self.spikeoutput)
# A list of spike event times
self.spiketimes = list(spiketimes)
def __init__(self, Name, ninemlComponent, Parent = None, Description = ""):
"""
Iterates over *Parameters*, *State variables*, *Aliases*, *Analogue ports*, *Event ports*,
*Sub-nodes* and *Port connections* and creates corresponding daetools objects.
:param Name: string
:param ninemlComponent: AL component object
:param Parent: daeModel-derived object
:param Description: string
:raises: RuntimeError
"""
#start = time()
daet.daeModel.__init__(self, Name, Parent, Description)
#print(' daeModel.__init__({0}) = {1}'.format(Name, time() - start))
start = time()
self.ninemlComponent = ninemlComponent
self.nineml_parameters = []
self.nineml_state_variables = []
self.nineml_aliases = []
self.nineml_analog_ports = []
self.nineml_reduce_ports = []
self.nineml_event_ports = []
self.ninemlSubComponents = []
# AL component may be None (useful in certain cases); therefore do not raise an exception
if not self.ninemlComponent:
return
# 1) Create parameters
for param in self.ninemlComponent.parameters:
self.nineml_parameters.append( daet.daeParameter(param.name, daet.unit(), self, "") )
# 2) Create state-variables (diff. variables)
for var in self.ninemlComponent.state_variables:
self.nineml_state_variables.append( daet.daeVariable(var.name, dae_nineml_t, self, "") )
# 3) Create alias variables (algebraic)
for alias in self.ninemlComponent.aliases:
self.nineml_aliases.append( daet.daeVariable(alias.lhs, dae_nineml_t, self, "") )
# 4) Create analog-ports and reduce-ports
for analog_port in self.ninemlComponent.analog_ports:
if analog_port.mode == 'send':
self.nineml_analog_ports.append( ninemlAnalogPort(analog_port.name, daet.eOutletPort, self, "") )
elif analog_port.mode == 'recv':
self.nineml_analog_ports.append( ninemlAnalogPort(analog_port.name, daet.eInletPort, self, "") )
elif analog_port.mode == 'reduce':
self.nineml_reduce_ports.append( ninemlReduceAnalogPort(analog_port.name, self) )
else:
raise RuntimeError("")
# 5) Create event-ports
for event_port in self.ninemlComponent.event_ports:
if event_port.mode == 'send':
self.nineml_event_ports.append( daet.daeEventPort(event_port.name, daet.eOutletPort, self, "") )
elif event_port.mode == 'recv':
self.nineml_event_ports.append( daet.daeEventPort(event_port.name, daet.eInletPort, self, "") )
else:
raise RuntimeError("")
# 6) Create sub-nodes
for name, subcomponent in list(self.ninemlComponent.subnodes.items()):
self.ninemlSubComponents.append( nineml_daetools_bridge(name, subcomponent, self, '') )
# 7) Create port connections
for port_connection in self.ninemlComponent.portconnections:
#print 'try to connect {0} to {1}'.format(port_connection[0].getstr('.'), port_connection[1].getstr('.'))
portFrom = getObjectFromNamespaceAddress(self, port_connection[0], look_for_ports = True, look_for_reduceports = True)
portTo = getObjectFromNamespaceAddress(self, port_connection[1], look_for_ports = True, look_for_reduceports = True)
#print ' {0} -> {1}\n'.format(type(portFrom), type(portTo))
connectPorts(portFrom, portTo, self)
def __init__(self, Name, ninemlComponent, Parent=None, Description=""):
"""
Iterates over *Parameters*, *State variables*, *Aliases*, *Analogue ports*, *Event ports*,
*Sub-nodes* and *Port connections* and creates corresponding daetools objects.
:param Name: string
:param ninemlComponent: AL component object
:param Parent: daeModel-derived object
:param Description: string
:raises: RuntimeError
"""
#start = time()
daet.daeModel.__init__(self, Name, Parent, Description)
#print(' daeModel.__init__({0}) = {1}'.format(Name, time() - start))
start = time()
self.ninemlComponent = ninemlComponent
self.nineml_parameters = []
self.nineml_state_variables = []
self.nineml_aliases = []
self.nineml_analog_ports = []
self.nineml_reduce_ports = []
self.nineml_event_ports = []
self.ninemlSubComponents = []
# AL component may be None (useful in certain cases); therefore do not raise an exception
if not self.ninemlComponent:
return
# 1) Create parameters
for param in self.ninemlComponent.parameters:
self.nineml_parameters.append(
daet.daeParameter(param.name, daet.unit(), self, ""))
# 2) Create state-variables (diff. variables)
for var in self.ninemlComponent.state_variables:
self.nineml_state_variables.append(
daet.daeVariable(var.name, dae_nineml_t, self, ""))
# 3) Create alias variables (algebraic)
for alias in self.ninemlComponent.aliases:
self.nineml_aliases.append(
daet.daeVariable(alias.lhs, dae_nineml_t, self, ""))
# 4) Create analog-ports and reduce-ports
for analog_port in self.ninemlComponent.analog_ports:
if analog_port.mode == 'send':
self.nineml_analog_ports.append(
ninemlAnalogPort(analog_port.name, daet.eOutletPort, self,
""))
elif analog_port.mode == 'recv':
self.nineml_analog_ports.append(
ninemlAnalogPort(analog_port.name, daet.eInletPort, self,
""))
elif analog_port.mode == 'reduce':
self.nineml_reduce_ports.append(
ninemlReduceAnalogPort(analog_port.name, self))
else:
raise RuntimeError("")
# 5) Create event-ports
for event_port in self.ninemlComponent.event_ports:
if event_port.mode == 'send':
self.nineml_event_ports.append(
daet.daeEventPort(event_port.name, daet.eOutletPort, self,
""))
elif event_port.mode == 'recv':
self.nineml_event_ports.append(
daet.daeEventPort(event_port.name, daet.eInletPort, self,
""))
else:
raise RuntimeError("")
# 6) Create sub-nodes
for name, subcomponent in list(self.ninemlComponent.subnodes.items()):
self.ninemlSubComponents.append(
nineml_daetools_bridge(name, subcomponent, self, ''))
# 7) Create port connections
for port_connection in self.ninemlComponent.portconnections:
#print 'try to connect {0} to {1}'.format(port_connection[0].getstr('.'), port_connection[1].getstr('.'))
portFrom = getObjectFromNamespaceAddress(self,
port_connection[0],
look_for_ports=True,
look_for_reduceports=True)
portTo = getObjectFromNamespaceAddress(self,
port_connection[1],
look_for_ports=True,
look_for_reduceports=True)
#print ' {0} -> {1}\n'.format(type(portFrom), type(portTo))
connectPorts(portFrom, portTo, self)
