Example #1
0
def test_from_delayed():
    from dask.delayed import delayed
    a, b, c = delayed([1, 2, 3]), delayed([4, 5, 6]), delayed([7, 8, 9])
    bb = from_delayed([a, b, c])
    assert bb.name == from_delayed([a, b, c]).name

    assert isinstance(bb, Bag)
    assert list(bb) == [1, 2, 3, 4, 5, 6, 7, 8, 9]

    asum_value = delayed(lambda X: sum(X))(a)
    asum_item = db.Item.from_delayed(asum_value)
    assert asum_value.compute() == asum_item.compute() == 6
Example #2
0
def test_from_delayed():
    from dask.delayed import value, do
    a, b, c = value([1, 2, 3]), value([4, 5, 6]), value([7, 8, 9])
    bb = from_delayed([a, b, c])
    assert bb.name == from_delayed([a, b, c]).name

    assert isinstance(bb, Bag)
    assert list(bb) == [1, 2, 3, 4, 5, 6, 7, 8, 9]

    asum_value = do(lambda X: sum(X))(a)
    asum_item = db.Item.from_delayed(asum_value)
    assert asum_value.compute() == asum_item.compute() == 6
Example #3
0
File: text.py Project: m-rossi/dask
def read_text(
    urlpath,
    blocksize=None,
    compression="infer",
    encoding=system_encoding,
    errors="strict",
    linedelimiter=None,
    collection=True,
    storage_options=None,
    files_per_partition=None,
    include_path=False,
):
    """Read lines from text files

    Parameters
    ----------
    urlpath : string or list
        Absolute or relative filepath(s). Prefix with a protocol like ``s3://``
        to read from alternative filesystems. To read from multiple files you
        can pass a globstring or a list of paths, with the caveat that they
        must all have the same protocol.
    blocksize: None, int, or str
        Size (in bytes) to cut up larger files.  Streams by default.
        Can be ``None`` for streaming, an integer number of bytes, or a string
        like "128MiB"
    compression: string
        Compression format like 'gzip' or 'xz'.  Defaults to 'infer'
    encoding: string
    errors: string
    linedelimiter: string or None
    collection: bool, optional
        Return dask.bag if True, or list of delayed values if false
    storage_options: dict
        Extra options that make sense to a particular storage connection, e.g.
        host, port, username, password, etc.
    files_per_partition: None or int
        If set, group input files into partitions of the requested size,
        instead of one partition per file. Mutually exclusive with blocksize.
    include_path: bool
        Whether or not to include the path in the bag.
        If true, elements are tuples of (line, path).
        Default is False.

    Examples
    --------
    >>> b = read_text('myfiles.1.txt')  # doctest: +SKIP
    >>> b = read_text('myfiles.*.txt')  # doctest: +SKIP
    >>> b = read_text('myfiles.*.txt.gz')  # doctest: +SKIP
    >>> b = read_text('s3://bucket/myfiles.*.txt')  # doctest: +SKIP
    >>> b = read_text('s3://key:secret@bucket/myfiles.*.txt')  # doctest: +SKIP
    >>> b = read_text('hdfs://namenode.example.com/myfiles.*.txt')  # doctest: +SKIP

    Parallelize a large file by providing the number of uncompressed bytes to
    load into each partition.

    >>> b = read_text('largefile.txt', blocksize='10MB')  # doctest: +SKIP

    Get file paths of the bag by setting include_path=True

    >>> b = read_text('myfiles.*.txt', include_path=True) # doctest: +SKIP
    >>> b.take(1) # doctest: +SKIP
    (('first line of the first file', '/home/dask/myfiles.0.txt'),)

    Returns
    -------
    dask.bag.Bag or list
        dask.bag.Bag if collection is True or list of Delayed lists otherwise.

    See Also
    --------
    from_sequence: Build bag from Python sequence
    """
    if blocksize is not None and files_per_partition is not None:
        raise ValueError(
            "Only one of blocksize or files_per_partition can be set")
    if isinstance(blocksize, str):
        blocksize = parse_bytes(blocksize)

    if blocksize is None:
        if linedelimiter in [None, "", "\n", "\r", "\r\n"]:
            newline = linedelimiter
            linedelimiter = None
        else:
            newline = ""
        files = open_files(
            urlpath,
            mode="rt",
            encoding=encoding,
            errors=errors,
            compression=compression,
            newline=newline,
            **(storage_options or {}),
        )
        if files_per_partition is None:
            blocks = [
                delayed(list)(delayed(
                    partial(file_to_blocks,
                            include_path,
                            delimiter=linedelimiter))(fil)) for fil in files
            ]
        else:
            blocks = []
            for start in range(0, len(files), files_per_partition):
                block_files = files[start:(start + files_per_partition)]
                block_lines = delayed(concat)(delayed(map)(
                    partial(file_to_blocks,
                            include_path,
                            delimiter=linedelimiter),
                    block_files,
                ))
                blocks.append(block_lines)
    else:
        # special case for linedelimiter=None: we will need to split on an actual bytestring
        # and the line reader will then use "universal" mode. Just as well that \r\n and \n
        # will both work (thankfully \r for MacOS is no longer a thing)
        o = read_bytes(
            urlpath,
            delimiter=linedelimiter.encode()
            if linedelimiter is not None else b"\n",
            blocksize=blocksize,
            sample=False,
            compression=compression,
            include_path=include_path,
            **(storage_options or {}),
        )
        raw_blocks = o[1]
        blocks = [
            delayed(decode)(b, encoding, errors, linedelimiter)
            for b in concat(raw_blocks)
        ]
        if include_path:
            paths = list(
                concat([[path] * len(raw_blocks[i])
                        for i, path in enumerate(o[2])]))
            blocks = [
                delayed(attach_path)(entry, path)
                for entry, path in zip(blocks, paths)
            ]

    if not blocks:
        raise ValueError("No files found", urlpath)

    if collection:
        blocks = from_delayed(blocks)

    return blocks