alpha=0.5,
color="lightpink",
edgecolor="grey")
plt.ylabel("Frequency", fontsize=8)
plt.xlabel("Longitude (decimal degrees)", fontsize=8)
plt.xticks(fontsize=8)
plt.yticks(fontsize=8)
plt.legend()
plt.savefig(destination_path)
if __name__ == "__main__":
# Open CSV file with the occurrences data.
base_path = "data/geodata/request_reports/"
filter_hash = filter_hash(geodata_filter, species_list.species_list)
csv_file_name = filter_hash + "_geodata.csv"
df = create_dataframe_from_csv(base_path + csv_file_name)
# Extract list with coordinates
latitude = column_to_list(df, "decimal_latitude")
longitude = column_to_list(df, "decimal_longitude")
species_name = column_to_list(df, "species_name")
coordinates_df = pd.DataFrame(
list(zip(species_name, latitude, longitude)),
columns=["species_name", "latitude", "longitude"])
# Plot occurrences location
destination_path = "data/geodata/outputs/occurrences_map.png"
shape_file = "data/geodata/uk_maps/GBR_adm0.shp" # UK map
plot_occurrences_map(coordinates_df, shape_file, destination_path)
limit = images_filter.limit
###############################################
# 2- Handle filter parameters
filter = {
"mediaType": media_type,
"country": country,
"hasCoordinate": has_coordinate,
"kingdom": kingdom,
"basisOfRecord": basis_of_record,
"institutionCode": institution_code,
"limit": limit
}
filter_information = images_filter.filter_information()
## Hash the filter information + species list string to use it for naming the results file
filter_hash = filter_hash(images_filter, species_list)
print(f"\nStarting request '{search_name}' identified by: {filter_hash}.")
## Save filter and species information to text file
save_filter = open_filter_report(filter_hash)
save_filter.write(f"{search_name}\n")
save_filter.write(f"{str(filter_information)}\n")
save_filter.write(f"Image download limit: {limit}\n\n")
save_filter.write("Input species list:\n")
for species in species_list:
save_filter.write(f"{species}\n")
save_filter.close()
# 3- Get species keys (same as taxon key)
species_taxon_key = get_taxon_key(species_list)
## Check if all species entered have a taxon key