def test_GitRepo_ssh_pull(remote_path, repo_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=True)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir, get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# modify remote:
remote_repo.checkout("ssh-test", ['-b'])
with open(op.join(remote_repo.path, "ssh_testfile.dat"), "w") as f:
f.write("whatever")
remote_repo.add("ssh_testfile.dat")
remote_repo.commit("ssh_testfile.dat added.")
# file is not locally known yet:
assert_not_in("ssh_testfile.dat", repo.get_indexed_files())
# pull changes:
repo.pull(remote="ssh-remote", refspec=remote_repo.get_active_branch())
ok_clean_git(repo.path, annex=False)
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# we actually pulled the changes
assert_in("ssh_testfile.dat", repo.get_indexed_files())
def test_GitRepo_set_remote_url(path):
gr = GitRepo(path, create=True)
gr.add_remote('some', 'http://example.com/.git')
eq_(gr.config['remote.some.url'],
'http://example.com/.git')
# change url:
gr.set_remote_url('some', 'http://believe.it')
eq_(gr.config['remote.some.url'],
'http://believe.it')
# set push url:
gr.set_remote_url('some', 'ssh://whatever.ru', push=True)
eq_(gr.config['remote.some.pushurl'],
'ssh://whatever.ru')
# add remote without url
url2 = 'http://repo2.example.com/.git'
gr.add_remote('some-without-url', url2)
eq_(gr.config['remote.some-without-url.url'], url2)
# "remove" it
gr.config.unset('remote.some-without-url.url', where='local')
with assert_raises(KeyError):
gr.config['remote.some-without-url.url']
eq_(set(gr.get_remotes()), {'some', 'some-without-url'})
eq_(set(gr.get_remotes(with_urls_only=True)), {'some'})
def test_GitRepo_ssh_pull(remote_path, repo_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=True)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir,
get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# modify remote:
remote_repo.checkout("ssh-test", ['-b'])
with open(op.join(remote_repo.path, "ssh_testfile.dat"), "w") as f:
f.write("whatever")
remote_repo.add("ssh_testfile.dat")
remote_repo.commit("ssh_testfile.dat added.")
# file is not locally known yet:
assert_not_in("ssh_testfile.dat", repo.get_indexed_files())
# pull changes:
repo.pull(remote="ssh-remote", refspec=remote_repo.get_active_branch())
ok_clean_git(repo.path, annex=False)
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# we actually pulled the changes
assert_in("ssh_testfile.dat", repo.get_indexed_files())
def test_GitRepo_ssh_push(repo_path, remote_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=True)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir,
get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# modify local repo:
repo.checkout("ssh-test", ['-b'])
with open(op.join(repo.path, "ssh_testfile.dat"), "w") as f:
f.write("whatever")
repo.add("ssh_testfile.dat")
repo.commit("ssh_testfile.dat added.")
# file is not known to the remote yet:
assert_not_in("ssh_testfile.dat", remote_repo.get_indexed_files())
# push changes:
pushed = repo.push(remote="ssh-remote", refspec="ssh-test")
# test PushInfo object for
assert_in("ssh-remote/ssh-test",
[commit.remote_ref.name for commit in pushed])
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# remote now knows the changes:
assert_in("ssh-test", remote_repo.get_branches())
assert_in("ssh_testfile.dat", remote_repo.get_files("ssh-test"))
# amend to make it require "--force":
repo.commit("amended", options=['--amend'])
# push without --force should yield an error:
pushed = repo.push(remote="ssh-remote", refspec="ssh-test")
assert_in("[rejected] (non-fast-forward)", pushed[0].summary)
# now push using force:
repo.push(remote="ssh-remote", refspec="ssh-test", force=True)
# correct commit message in remote:
assert_in("amended",
list(remote_repo.get_branch_commits('ssh-test'))[-1].summary)
def test_GitRepo_ssh_push(repo_path, remote_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=True)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir, get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# modify local repo:
repo.checkout("ssh-test", ['-b'])
with open(op.join(repo.path, "ssh_testfile.dat"), "w") as f:
f.write("whatever")
repo.add("ssh_testfile.dat")
repo.commit("ssh_testfile.dat added.")
# file is not known to the remote yet:
assert_not_in("ssh_testfile.dat", remote_repo.get_indexed_files())
# push changes:
pushed = repo.push(remote="ssh-remote", refspec="ssh-test")
# test PushInfo object for
assert_in("ssh-remote/ssh-test", [commit.remote_ref.name for commit in pushed])
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# remote now knows the changes:
assert_in("ssh-test", remote_repo.get_branches())
assert_in("ssh_testfile.dat", remote_repo.get_files("ssh-test"))
# amend to make it require "--force":
repo.commit("amended", options=['--amend'])
# push without --force should yield an error:
pushed = repo.push(remote="ssh-remote", refspec="ssh-test")
assert_in("[rejected] (non-fast-forward)", pushed[0].summary)
# now push using force:
repo.push(remote="ssh-remote", refspec="ssh-test", force=True)
# correct commit message in remote:
assert_in("amended",
list(remote_repo.get_branch_commits('ssh-test'))[-1].summary)
def test_GitRepo_remote_update(path1, path2, path3):
git1 = GitRepo(path1)
git2 = GitRepo(path2)
git3 = GitRepo(path3)
git1.add_remote('git2', path2)
git1.add_remote('git3', path3)
# Setting up remote 'git2'
with open(op.join(path2, 'masterfile'), 'w') as f:
f.write("git2 in master")
git2.add('masterfile')
git2.commit("Add something to master.")
git2.checkout('branch2', ['-b'])
with open(op.join(path2, 'branch2file'), 'w') as f:
f.write("git2 in branch2")
git2.add('branch2file')
git2.commit("Add something to branch2.")
# Setting up remote 'git3'
with open(op.join(path3, 'masterfile'), 'w') as f:
f.write("git3 in master")
git3.add('masterfile')
git3.commit("Add something to master.")
git3.checkout('branch3', ['-b'])
with open(op.join(path3, 'branch3file'), 'w') as f:
f.write("git3 in branch3")
git3.add('branch3file')
git3.commit("Add something to branch3.")
git1.update_remote()
# checkouts are 'tests' themselves, since they'll raise CommandError
# if something went wrong
git1.checkout('branch2')
git1.checkout('branch3')
branches1 = git1.get_branches()
eq_({'branch2', 'branch3'}, set(branches1))
def test_GitRepo_remote_update(path1, path2, path3):
git1 = GitRepo(path1)
git2 = GitRepo(path2)
git3 = GitRepo(path3)
git1.add_remote('git2', path2)
git1.add_remote('git3', path3)
# Setting up remote 'git2'
with open(op.join(path2, 'masterfile'), 'w') as f:
f.write("git2 in master")
git2.add('masterfile')
git2.commit("Add something to master.")
git2.checkout('branch2', ['-b'])
with open(op.join(path2, 'branch2file'), 'w') as f:
f.write("git2 in branch2")
git2.add('branch2file')
git2.commit("Add something to branch2.")
# Setting up remote 'git3'
with open(op.join(path3, 'masterfile'), 'w') as f:
f.write("git3 in master")
git3.add('masterfile')
git3.commit("Add something to master.")
git3.checkout('branch3', ['-b'])
with open(op.join(path3, 'branch3file'), 'w') as f:
f.write("git3 in branch3")
git3.add('branch3file')
git3.commit("Add something to branch3.")
git1.update_remote()
# checkouts are 'tests' themselves, since they'll raise CommandError
# if something went wrong
git1.checkout('branch2')
git1.checkout('branch3')
branches1 = git1.get_branches()
eq_({'branch2', 'branch3'}, set(branches1))
def test_GitRepo_set_remote_url(path):
gr = GitRepo(path, create=True)
gr.add_remote('some', 'http://example.com/.git')
eq_(gr.config['remote.some.url'], 'http://example.com/.git')
# change url:
gr.set_remote_url('some', 'http://believe.it')
eq_(gr.config['remote.some.url'], 'http://believe.it')
# set push url:
gr.set_remote_url('some', 'ssh://whatever.ru', push=True)
eq_(gr.config['remote.some.pushurl'], 'ssh://whatever.ru')
# add remote without url
url2 = 'http://repo2.example.com/.git'
gr.add_remote('some-without-url', url2)
eq_(gr.config['remote.some-without-url.url'], url2)
# "remove" it
gr.config.unset('remote.some-without-url.url', where='local')
with assert_raises(KeyError):
gr.config['remote.some-without-url.url']
eq_(set(gr.get_remotes()), {'some', 'some-without-url'})
eq_(set(gr.get_remotes(with_urls_only=True)), {'some'})
def test_GitRepo_ssh_fetch(remote_path, repo_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=False)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir, get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# we don't know any branches of the remote:
eq_([], repo.get_remote_branches())
fetched = repo.fetch(remote="ssh-remote")
assert_in('ssh-remote/master', [commit.name for commit in fetched])
ok_clean_git(repo)
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# we actually fetched it:
assert_in('ssh-remote/master', repo.get_remote_branches())
def test_GitRepo_ssh_fetch(remote_path, repo_path):
from datalad import ssh_manager
remote_repo = GitRepo(remote_path, create=False)
url = "ssh://localhost" + op.abspath(remote_path)
socket_path = op.join(ssh_manager.socket_dir,
get_connection_hash('localhost'))
repo = GitRepo(repo_path, create=True)
repo.add_remote("ssh-remote", url)
# we don't know any branches of the remote:
eq_([], repo.get_remote_branches())
fetched = repo.fetch(remote="ssh-remote")
assert_in('ssh-remote/master', [commit.name for commit in fetched])
ok_clean_git(repo)
# the connection is known to the SSH manager, since fetch() requested it:
assert_in(socket_path, ssh_manager._connections)
# and socket was created:
ok_(op.exists(socket_path))
# we actually fetched it:
assert_in('ssh-remote/master', repo.get_remote_branches())
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub, dst_clone_path):
# prepare src
source = install(src_path, source=origin, recursive=True)
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = GitRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# TMP: Insert the fetch to prevent GitPython to fail after the push,
# because it cannot resolve the SHA of the old commit of the remote,
# that git reports back after the push.
# TODO: Figure out, when to fetch things in general; Alternatively:
# Is there an option for push, that prevents GitPython from failing?
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['test-annex.dat'])
# first it would publish data and then push
eq_(res, (['test-annex.dat', source], []))
# XXX master was not checked out in dst!
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
# TODO: last commit in git-annex branch differs. Probably fine,
# but figure out, when exactly to expect this for proper testing:
# yoh: they differ because local annex records information about now
# file being available in that remote, and remote one does it via a call in
# the hook I guess. So they both get the same information but in two
# different commits. I do not observe such behavior of remote having git-annex
# automagically updated in older clones
# which do not have post-receive hook on remote side
eq_(list(target.get_branch_commits("git-annex"))[1:],
list(source.repo.get_branch_commits("git-annex"))[1:])
# we need compare target/master:
target.checkout("master")
ok_(target.file_has_content('test-annex.dat'))
# make sure that whatever we published is actually consumable
dst_clone = install(
dst_clone_path, source=dst_path,
result_xfm='datasets', return_type='item-or-list')
nok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = dst_clone.get('test-annex.dat')
ok_(dst_clone.repo.file_has_content('test-annex.dat'))
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['.'])
# there is nothing to publish on 2nd attempt
#eq_(res, ([source, 'test-annex.dat'], []))
eq_(res, ([], []))
source.repo.fetch("target")
import glob
res = publish(dataset=source, to="target", path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# collect result paths:
result_paths = []
for item in res[0]:
result_paths.append(item.path if isinstance(item, Dataset) else item)
# only the subdatasets, targets are plain git repos, hence
# no file content is pushed, all content in super was pushed
# before
eq_({sub1.path, sub2.path},
set(result_paths))
# if we publish again -- nothing to be published
eq_(source.publish(to="target"), ([], []))
# if we drop a file and publish again -- dataset should be published
# since git-annex branch was updated
source.drop('test-annex.dat')
eq_(source.publish(to="target"), ([source], []))
eq_(source.publish(to="target"), ([], [])) # and empty again if we try again
def test_publish_recursive(pristine_origin, origin_path, src_path, dst_path, sub1_pub, sub2_pub):
# we will be publishing back to origin, so to not alter testrepo
# we will first clone it
origin = install(origin_path, source=pristine_origin, recursive=True)
# prepare src
source = install(src_path, source=origin_path, recursive=True)
# create plain git at target:
target = GitRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# subdatasets have no remote yet, so recursive publishing should fail:
with assert_raises(ValueError) as cm:
publish(dataset=source, to="target", recursive=True)
assert_in("Unknown target sibling 'target'", exc_str(cm.exception))
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
# we will be testing presence of the file content, so let's make it progress
sub2_target.config.set('receive.denyCurrentBranch', 'updateInstead', where='local')
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# publish recursively
with swallow_logs(new_level=logging.DEBUG) as cml:
res = publish(dataset=source, to="target", recursive=True)
assert_not_in(
'forced update', cml.out,
"we probably haven't merged git-annex before pushing"
)
# testing result list
# (Note: Dataset lacks __eq__ for now. Should this be based on path only?)
assert_is_instance(res, tuple)
assert_is_instance(res[0], list)
assert_is_instance(res[1], list)
eq_(res[1], []) # nothing failed/was skipped
for item in res[0]:
assert_is_instance(item, Dataset)
eq_({res[0][0].path, res[0][1].path, res[0][2].path},
{src_path, sub1.path, sub2.path})
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
eq_(list(target.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
eq_(list(sub1_target.get_branch_commits("master")),
list(sub1.get_branch_commits("master")))
eq_(list(sub1_target.get_branch_commits("git-annex")),
list(sub1.get_branch_commits("git-annex")))
eq_(list(sub2_target.get_branch_commits("master")),
list(sub2.get_branch_commits("master")))
eq_(list(sub2_target.get_branch_commits("git-annex")),
list(sub2.get_branch_commits("git-annex")))
# we are tracking origin but origin has different git-annex, since we
# cloned from it, so it is not aware of our git-annex
neq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# So if we first publish to it recursively, we would update
# all sub-datasets since git-annex branch would need to be pushed
res_ = publish(dataset=source, recursive=True)
eq_(set(r.path for r in res_[0]),
set(opj(*([source.path] + x)) for x in ([], ['subm 1'], ['subm 2'])))
# and now should carry the same state for git-annex
eq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# test for publishing with --since. By default since no changes, nothing pushed
res_ = publish(dataset=source, recursive=True)
eq_(set(r.path for r in res_[0]), set())
# still nothing gets pushed, because origin is up to date
res_ = publish(dataset=source, recursive=True, since='HEAD^')
eq_(set(r.path for r in res_[0]), set([]))
# and we should not fail if we run it from within the dataset
with chpwd(source.path):
res_ = publish(recursive=True, since='HEAD^')
eq_(set(r.path for r in res_[0]), set([]))
# Let's now update one subm
with open(opj(sub2.path, "file.txt"), 'w') as f:
f.write('')
# add to subdataset, does not alter super dataset!
# MIH: use `to_git` because original test author used
# and explicit `GitRepo.add` -- keeping this for now
Dataset(sub2.path).add('file.txt', to_git=True)
# Let's now update one subm
create_tree(sub2.path, {'file.dat': 'content'})
# add to subdataset, without reflecting the change in its super(s)
Dataset(sub2.path).add('file.dat')
# note: will publish to origin here since that is what it tracks
res_published, res_skipped = publish(dataset=source, recursive=True)
# only updates published, i.e. just the subdataset, super wasn't altered
# nothing copied!
eq_(res_published, [Dataset(sub2.path)])
eq_(res_skipped, [])
# since published to origin -- destination should not get that file
nok_(lexists(opj(sub2_target.path, 'file.dat')))
res_published, res_skipped = publish(dataset=source, to='target', recursive=True)
eq_(res_published, [Dataset(sub2.path)])
# Note: with updateInstead only in target2 and not saving change in
# super-dataset we would have made remote dataset, if we had entire
# hierarchy, to be somewhat inconsistent.
# But here, since target datasets are independent -- it is ok
# and the file itself was not transferred but now exists
ok_(lexists(opj(sub2_target.path, 'file.dat')))
nok_(sub2_target.file_has_content('file.dat'))
# but now we can redo publish recursively, at least stating to consider
# explicitly to copy .
res_published, res_skipped = publish(
'.',
dataset=source, to='target',
recursive=True
)
ok_(sub2_target.file_has_content('file.dat'))
eq_(res_published, ['file.dat']) # note that this report makes little sense without path to the repository
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub,
dst_clone_path):
# prepare src
source = install(src_path, source=origin, recursive=True)
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
# the need to be annexes, because we want to be able to copy data to them
# further down
sub1_target = AnnexRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, '2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
res = publish(dataset=source,
to="target",
path=['test-annex.dat'],
result_xfm='paths')
# first it would publish data and then push
# TODO order is not fixed (yet)
#eq_(res, [opj(source.path, 'test-annex.dat'), source.path])
eq_(set(res), set([opj(source.path, 'test-annex.dat'), source.path]))
# XXX master was not checked out in dst!
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
# TODO: last commit in git-annex branch differs. Probably fine,
# but figure out, when exactly to expect this for proper testing:
# yoh: they differ because local annex records information about now
# file being available in that remote, and remote one does it via a call in
# the hook I guess. So they both get the same information but in two
# different commits. I do not observe such behavior of remote having git-annex
# automagically updated in older clones
# which do not have post-receive hook on remote side
eq_(
list(target.get_branch_commits("git-annex"))[1:],
list(source.repo.get_branch_commits("git-annex"))[1:])
# we need compare target/master:
target.checkout("master")
ok_(target.file_has_content('test-annex.dat'))
# make sure that whatever we published is actually consumable
dst_clone = install(dst_clone_path,
source=dst_path,
result_xfm='datasets',
return_type='item-or-list')
nok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = dst_clone.get('test-annex.dat')
ok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = publish(dataset=source, to="target", path=['.'])
# there is nothing to publish on 2nd attempt
#eq_(res, ([source, 'test-annex.dat'], []))
assert_result_count(res, 1, status='notneeded')
import glob
res = publish(dataset=source,
to="target",
path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# only the subdatasets, targets are plain git repos, hence
# no file content is pushed, all content in super was pushed
# before
assert_result_count(res, 3)
assert_result_count(res, 1, status='ok', path=sub1.path)
assert_result_count(res, 1, status='ok', path=sub2.path)
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we publish again -- nothing to be published
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we drop a file and publish again -- dataset should be published
# since git-annex branch was updated
source.drop('test-annex.dat')
res = source.publish(to="target")
assert_result_count(res, 1, status='ok', path=source.path)
# and empty again if we try again
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
def test_publish_recursive(pristine_origin, origin_path, src_path, dst_path,
sub1_pub, sub2_pub):
# we will be publishing back to origin, so to not alter testrepo
# we will first clone it
origin = install(origin_path, source=pristine_origin, recursive=True)
# prepare src
source = install(src_path, source=origin.path, recursive=True)
# we will be trying to push into this later on, need to give permissions...
origin_sub2 = Dataset(opj(origin_path, '2'))
origin_sub2.config.set('receive.denyCurrentBranch',
'updateInstead',
where='local')
## TODO this manual fixup is needed due to gh-1548 -- needs proper solution
#os.remove(opj(origin_sub2.path, '.git'))
#os.rename(opj(origin_path, '.git', 'modules', '2'), opj(origin_sub2.path, '.git'))
# create plain git at target:
target = GitRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# subdatasets have no remote yet, so recursive publishing should fail:
res = publish(dataset=source,
to="target",
recursive=True,
on_failure='ignore')
assert_result_count(res, 3)
assert_result_count(res, 1, status='ok', type='dataset', path=source.path)
assert_result_count(res,
2,
status='error',
message=("Unknown target sibling '%s' for publication",
'target'))
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
# we will be testing presence of the file content, so let's make it progress
sub2_target.config.set('receive.denyCurrentBranch',
'updateInstead',
where='local')
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, '2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# publish recursively
with swallow_logs(new_level=logging.DEBUG) as cml:
res = publish(dataset=source, to="target", recursive=True)
assert_not_in('forced update', cml.out,
"we probably haven't merged git-annex before pushing")
# testing result list
# base dataset was already published above, notneeded again
assert_status(('ok', 'notneeded'), res) # nothing failed
assert_result_count(res, 3, type='dataset')
eq_({r['path'] for r in res}, {src_path, sub1.path, sub2.path})
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
eq_(list(target.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
eq_(list(sub1_target.get_branch_commits("master")),
list(sub1.get_branch_commits("master")))
eq_(list(sub1_target.get_branch_commits("git-annex")),
list(sub1.get_branch_commits("git-annex")))
eq_(list(sub2_target.get_branch_commits("master")),
list(sub2.get_branch_commits("master")))
eq_(list(sub2_target.get_branch_commits("git-annex")),
list(sub2.get_branch_commits("git-annex")))
# we are tracking origin but origin has different git-annex, since we
# cloned from it, so it is not aware of our git-annex
neq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# So if we first publish to it recursively, we would update
# all sub-datasets since git-annex branch would need to be pushed
res_ = publish(dataset=source, recursive=True)
assert_result_count(res_, 1, status='ok', path=source.path)
assert_result_count(res_, 1, status='ok', path=sub1.path)
assert_result_count(res_, 1, status='ok', path=sub2.path)
# and now should carry the same state for git-annex
eq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# test for publishing with --since. By default since no changes, nothing pushed
res_ = publish(dataset=source, recursive=True)
assert_result_count(res_, 3, status='notneeded', type='dataset')
# still nothing gets pushed, because origin is up to date
res_ = publish(dataset=source, recursive=True, since='HEAD^')
assert_result_count(res_, 3, status='notneeded', type='dataset')
# and we should not fail if we run it from within the dataset
with chpwd(source.path):
res_ = publish(recursive=True, since='HEAD^')
assert_result_count(res_, 3, status='notneeded', type='dataset')
# Let's now update one subm
with open(opj(sub2.path, "file.txt"), 'w') as f:
f.write('')
# add to subdataset, does not alter super dataset!
# MIH: use `to_git` because original test author used
# and explicit `GitRepo.add` -- keeping this for now
Dataset(sub2.path).add('file.txt', to_git=True)
# Let's now update one subm
create_tree(sub2.path, {'file.dat': 'content'})
# add to subdataset, without reflecting the change in its super(s)
Dataset(sub2.path).add('file.dat')
# note: will publish to origin here since that is what it tracks
res_ = publish(dataset=source, recursive=True, on_failure='ignore')
## only updates published, i.e. just the subdataset, super wasn't altered
## nothing copied!
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=sub2.path, type='dataset')
assert_result_count(res_, 0, path=opj(sub2.path, 'file.dat'), type='file')
# since published to origin -- destination should not get that file
nok_(lexists(opj(sub2_target.path, 'file.dat')))
res_ = publish(dataset=source, to='target', recursive=True)
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=sub2.path, type='dataset')
assert_result_count(res_, 0, path=opj(sub2.path, 'file.dat'), type='file')
# Note: with updateInstead only in target2 and not saving change in
# super-dataset we would have made remote dataset, if we had entire
# hierarchy, to be somewhat inconsistent.
# But here, since target datasets are independent -- it is ok
# and the file itself was transferred
ok_(lexists(opj(sub2_target.path, 'file.dat')))
nok_(sub2_target.file_has_content('file.dat'))
## but now we can redo publish recursively, with explicitly requested data transfer
res_ = publish(dataset=source,
to='target',
recursive=True,
transfer_data='all')
ok_(sub2_target.file_has_content('file.dat'))
assert_result_count(res_, 1, status='ok', path=opj(sub2.path, 'file.dat'))
# Let's save those present changes and publish while implying "since last
# merge point"
source.save(message="Changes in subm2")
# and test if it could deduce the remote/branch to push to
source.config.set('branch.master.remote', 'target', where='local')
with chpwd(source.path):
res_ = publish(since='', recursive=True)
# TODO: somehow test that there were no even attempt to diff within "subm 1"
# since if `--since=''` worked correctly, nothing has changed there and it
# should have not been even touched
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=source.path, type='dataset')
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub, dst_clone_path):
# prepare src
source = install(src_path, source=origin, recursive=True)
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
# the need to be annexes, because we want to be able to copy data to them
# further down
sub1_target = AnnexRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, '2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
res = publish(dataset=source, to="target", path=['test-annex.dat'], result_xfm='paths')
# first it would publish data and then push
# TODO order is not fixed (yet)
#eq_(res, [opj(source.path, 'test-annex.dat'), source.path])
eq_(set(res), set([opj(source.path, 'test-annex.dat'), source.path]))
# XXX master was not checked out in dst!
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
# TODO: last commit in git-annex branch differs. Probably fine,
# but figure out, when exactly to expect this for proper testing:
# yoh: they differ because local annex records information about now
# file being available in that remote, and remote one does it via a call in
# the hook I guess. So they both get the same information but in two
# different commits. I do not observe such behavior of remote having git-annex
# automagically updated in older clones
# which do not have post-receive hook on remote side
eq_(list(target.get_branch_commits("git-annex"))[1:],
list(source.repo.get_branch_commits("git-annex"))[1:])
# we need compare target/master:
target.checkout("master")
ok_(target.file_has_content('test-annex.dat'))
# make sure that whatever we published is actually consumable
dst_clone = install(
dst_clone_path, source=dst_path,
result_xfm='datasets', return_type='item-or-list')
nok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = dst_clone.get('test-annex.dat')
ok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = publish(dataset=source, to="target", path=['.'])
# there is nothing to publish on 2nd attempt
#eq_(res, ([source, 'test-annex.dat'], []))
assert_result_count(res, 1, status='notneeded')
import glob
res = publish(dataset=source, to="target", path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# only the subdatasets, targets are plain git repos, hence
# no file content is pushed, all content in super was pushed
# before
assert_result_count(res, 3)
assert_result_count(res, 1, status='ok', path=sub1.path)
assert_result_count(res, 1, status='ok', path=sub2.path)
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we publish again -- nothing to be published
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we drop a file and publish again -- dataset should be published
# since git-annex branch was updated
source.drop('test-annex.dat')
res = source.publish(to="target")
assert_result_count(res, 1, status='ok', path=source.path)
# and empty again if we try again
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
def test_publish_recursive(pristine_origin, origin_path, src_path, dst_path, sub1_pub, sub2_pub):
# we will be publishing back to origin, so to not alter testrepo
# we will first clone it
origin = install(origin_path, source=pristine_origin, recursive=True)
# prepare src
source = install(src_path, source=origin.path, recursive=True)
# we will be trying to push into this later on, need to give permissions...
origin_sub2 = Dataset(opj(origin_path, '2'))
origin_sub2.config.set(
'receive.denyCurrentBranch', 'updateInstead', where='local')
## TODO this manual fixup is needed due to gh-1548 -- needs proper solution
#os.remove(opj(origin_sub2.path, '.git'))
#os.rename(opj(origin_path, '.git', 'modules', '2'), opj(origin_sub2.path, '.git'))
# create plain git at target:
target = GitRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# subdatasets have no remote yet, so recursive publishing should fail:
res = publish(dataset=source, to="target", recursive=True, on_failure='ignore')
assert_result_count(res, 3)
assert_result_count(
res, 1, status='ok', type='dataset', path=source.path)
assert_result_count(
res, 2, status='error',
message=("Unknown target sibling '%s' for publication", 'target'))
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
# we will be testing presence of the file content, so let's make it progress
sub2_target.config.set('receive.denyCurrentBranch', 'updateInstead', where='local')
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, '2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# publish recursively
with swallow_logs(new_level=logging.DEBUG) as cml:
res = publish(dataset=source, to="target", recursive=True)
assert_not_in(
'forced update', cml.out,
"we probably haven't merged git-annex before pushing"
)
# testing result list
# base dataset was already published above, notneeded again
assert_status(('ok', 'notneeded'), res) # nothing failed
assert_result_count(
res, 3, type='dataset')
eq_({r['path'] for r in res},
{src_path, sub1.path, sub2.path})
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
eq_(list(target.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
eq_(list(sub1_target.get_branch_commits("master")),
list(sub1.get_branch_commits("master")))
eq_(list(sub1_target.get_branch_commits("git-annex")),
list(sub1.get_branch_commits("git-annex")))
eq_(list(sub2_target.get_branch_commits("master")),
list(sub2.get_branch_commits("master")))
eq_(list(sub2_target.get_branch_commits("git-annex")),
list(sub2.get_branch_commits("git-annex")))
# we are tracking origin but origin has different git-annex, since we
# cloned from it, so it is not aware of our git-annex
neq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# So if we first publish to it recursively, we would update
# all sub-datasets since git-annex branch would need to be pushed
res_ = publish(dataset=source, recursive=True)
assert_result_count(res_, 1, status='ok', path=source.path)
assert_result_count(res_, 1, status='ok', path=sub1.path)
assert_result_count(res_, 1, status='ok', path=sub2.path)
# and now should carry the same state for git-annex
eq_(list(origin.repo.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
# test for publishing with --since. By default since no changes, nothing pushed
res_ = publish(dataset=source, recursive=True)
assert_result_count(
res_, 3, status='notneeded', type='dataset')
# still nothing gets pushed, because origin is up to date
res_ = publish(dataset=source, recursive=True, since='HEAD^')
assert_result_count(
res_, 3, status='notneeded', type='dataset')
# and we should not fail if we run it from within the dataset
with chpwd(source.path):
res_ = publish(recursive=True, since='HEAD^')
assert_result_count(
res_, 3, status='notneeded', type='dataset')
# Let's now update one subm
with open(opj(sub2.path, "file.txt"), 'w') as f:
f.write('')
# add to subdataset, does not alter super dataset!
# MIH: use `to_git` because original test author used
# and explicit `GitRepo.add` -- keeping this for now
Dataset(sub2.path).add('file.txt', to_git=True)
# Let's now update one subm
create_tree(sub2.path, {'file.dat': 'content'})
# add to subdataset, without reflecting the change in its super(s)
Dataset(sub2.path).add('file.dat')
# note: will publish to origin here since that is what it tracks
res_ = publish(dataset=source, recursive=True, on_failure='ignore')
## only updates published, i.e. just the subdataset, super wasn't altered
## nothing copied!
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=sub2.path, type='dataset')
assert_result_count(res_, 0, path=opj(sub2.path, 'file.dat'), type='file')
# since published to origin -- destination should not get that file
nok_(lexists(opj(sub2_target.path, 'file.dat')))
res_ = publish(dataset=source, to='target', recursive=True)
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=sub2.path, type='dataset')
assert_result_count(res_, 0, path=opj(sub2.path, 'file.dat'), type='file')
# Note: with updateInstead only in target2 and not saving change in
# super-dataset we would have made remote dataset, if we had entire
# hierarchy, to be somewhat inconsistent.
# But here, since target datasets are independent -- it is ok
# and the file itself was transferred
ok_(lexists(opj(sub2_target.path, 'file.dat')))
nok_(sub2_target.file_has_content('file.dat'))
## but now we can redo publish recursively, with explicitly requested data transfer
res_ = publish(
dataset=source, to='target',
recursive=True,
transfer_data='all'
)
ok_(sub2_target.file_has_content('file.dat'))
assert_result_count(
res_, 1, status='ok', path=opj(sub2.path, 'file.dat'))
# Let's save those present changes and publish while implying "since last
# merge point"
source.save(message="Changes in subm2")
# and test if it could deduce the remote/branch to push to
source.config.set('branch.master.remote', 'target', where='local')
with chpwd(source.path):
res_ = publish(since='', recursive=True)
# TODO: somehow test that there were no even attempt to diff within "subm 1"
# since if `--since=''` worked correctly, nothing has changed there and it
# should have not been even touched
assert_status(('ok', 'notneeded'), res_)
assert_result_count(res_, 1, status='ok', path=source.path, type='dataset')
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub,
dst_clone_path):
# prepare src
source = install(src_path, source=origin, recursive=True)
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
# the need to be annexes, because we want to be able to copy data to them
# further down
sub1_target = AnnexRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, '2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
res = publish(dataset=source,
to="target",
path=['test-annex.dat'],
result_xfm='paths')
# first it would publish data and then push
# TODO order is not fixed (yet)
#eq_(res, [opj(source.path, 'test-annex.dat'), source.path])
eq_(set(res), set([opj(source.path, 'test-annex.dat'), source.path]))
# XXX master was not checked out in dst!
eq_(list(target.get_branch_commits_(DEFAULT_BRANCH)),
list(source.repo.get_branch_commits_(DEFAULT_BRANCH)))
assert_git_annex_branch_published(source.repo, target)
# we need compare target/<default branch>:
target.checkout(DEFAULT_BRANCH)
ok_(target.file_has_content('test-annex.dat'))
# make sure that whatever we published is actually consumable
dst_clone = install(dst_clone_path,
source=dst_path,
result_xfm='datasets',
return_type='item-or-list')
nok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = dst_clone.get('test-annex.dat')
ok_(dst_clone.repo.file_has_content('test-annex.dat'))
res = publish(dataset=source, to="target", path=['.'])
# there is nothing to publish on 2nd attempt
#eq_(res, ([source, 'test-annex.dat'], []))
assert_result_count(res, 1, status='notneeded')
import glob
res = publish(dataset=source,
to="target",
path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# only the subdatasets, targets are plain git repos, hence
# no file content is pushed, all content in super was pushed
# before
assert_result_count(res, 3)
assert_result_count(res, 1, status='ok', path=sub1.path)
assert_result_count(res, 1, status='ok', path=sub2.path)
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we publish again -- nothing to be published
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
# if we drop a file and publish again -- dataset should be published
# since git-annex branch was updated
source.drop('test-annex.dat')
res = source.publish(to="target")
assert_result_count(res, 1, status='ok', path=source.path)
# and empty again if we try again
res = source.publish(to="target")
assert_result_count(res, 1, status='notneeded', path=source.path)
# data integrity check looks identical from all perspectives
# minus "note" statements from git-annex
eq_(filter_fsck_error_msg(source.repo.fsck()),
filter_fsck_error_msg(source.repo.fsck(remote='target')))
eq_(filter_fsck_error_msg(target.fsck()),
filter_fsck_error_msg(source.repo.fsck(remote='target')))
def test_publish_recursive(origin, src_path, dst_path, sub1_pub, sub2_pub):
# prepare src
source = install(src_path, source=origin, recursive=True)[0]
# create plain git at target:
target = GitRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# subdatasets have no remote yet, so recursive publishing should fail:
with assert_raises(ValueError) as cm:
publish(dataset=source, to="target", recursive=True)
assert_in("No sibling 'target' found", exc_str(cm.exception))
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# publish recursively
with swallow_logs(new_level=logging.DEBUG) as cml:
res = publish(dataset=source, to="target", recursive=True)
assert_not_in(
'forced update', cml.out,
"we probably haven't merged git-annex before pushing"
)
# testing result list
# (Note: Dataset lacks __eq__ for now. Should this be based on path only?)
assert_is_instance(res, tuple)
assert_is_instance(res[0], list)
assert_is_instance(res[1], list)
eq_(res[1], []) # nothing failed/was skipped
for item in res[0]:
assert_is_instance(item, Dataset)
eq_({res[0][0].path, res[0][1].path, res[0][2].path},
{src_path, sub1.path, sub2.path})
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
eq_(list(target.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
eq_(list(sub1_target.get_branch_commits("master")),
list(sub1.get_branch_commits("master")))
eq_(list(sub1_target.get_branch_commits("git-annex")),
list(sub1.get_branch_commits("git-annex")))
eq_(list(sub2_target.get_branch_commits("master")),
list(sub2.get_branch_commits("master")))
eq_(list(sub2_target.get_branch_commits("git-annex")),
list(sub2.get_branch_commits("git-annex")))
# test for publishing with --since. By default since no changes, only current pushed
res_ = publish(dataset=source, recursive=True)
# only current one would get pushed
eq_(set(r.path for r in res_[0]), {src_path})
# all get pushed
res_ = publish(dataset=source, recursive=True, since='HEAD^')
eq_(set(r.path for r in res_[0]), {src_path, sub1.path, sub2.path})
# Let's now update one subm
with open(opj(sub2.path, "file.txt"), 'w') as f:
f.write('')
sub2.add('file.txt')
sub2.commit("")
# TODO: Doesn't work: https://github.com/datalad/datalad/issues/636
#source.save("changed sub2", all_changes=True)
source.repo.commit("", options=['-a'])
res_ = publish(dataset=source, recursive=True)
# only updated ones were published
eq_(set(r.path for r in res_[0]), {src_path, sub2.path})
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub):
# prepare src
source = install(src_path, source=origin, recursive=True)[0]
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = GitRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# TMP: Insert the fetch to prevent GitPython to fail after the push,
# because it cannot resolve the SHA of the old commit of the remote,
# that git reports back after the push.
# TODO: Figure out, when to fetch things in general; Alternatively:
# Is there an option for push, that prevents GitPython from failing?
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['test-annex.dat'])
eq_(res, ([source, 'test-annex.dat'], []))
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
# TODO: last commit in git-annex branch differs. Probably fine,
# but figure out, when exactly to expect this for proper testing:
eq_(
list(target.get_branch_commits("git-annex"))[1:],
list(source.repo.get_branch_commits("git-annex"))[1:])
# we need compare target/master:
target.checkout("master")
eq_(target.file_has_content(['test-annex.dat']), [True])
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['.'])
eq_(res, ([source, 'test-annex.dat'], []))
source.repo.fetch("target")
import glob
res = publish(dataset=source,
to="target",
path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# collect result paths:
result_paths = []
for item in res[0]:
if isinstance(item, Dataset):
result_paths.append(item.path)
else:
result_paths.append(item)
eq_(
{
source.path,
opj(source.path, "subm 1"),
opj(source.path, "subm 2"), 'test-annex.dat'
}, set(result_paths))
def test_publish_recursive(origin, src_path, dst_path, sub1_pub, sub2_pub):
# prepare src
source = install(src_path, source=origin, recursive=True)[0]
# create plain git at target:
target = GitRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# subdatasets have no remote yet, so recursive publishing should fail:
with assert_raises(ValueError) as cm:
publish(dataset=source, to="target", recursive=True)
assert_in("No sibling 'target' found.", str(cm.exception))
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = AnnexRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# publish recursively
with swallow_logs(new_level=logging.DEBUG) as cml:
res = publish(dataset=source, to="target", recursive=True)
assert_not_in('forced update', cml.out,
"we probably haven't merged git-annex before pushing")
# testing result list
# (Note: Dataset lacks __eq__ for now. Should this be based on path only?)
assert_is_instance(res, tuple)
assert_is_instance(res[0], list)
assert_is_instance(res[1], list)
eq_(res[1], []) # nothing failed/was skipped
for item in res[0]:
assert_is_instance(item, Dataset)
eq_({res[0][0].path, res[0][1].path, res[0][2].path},
{src_path, sub1.path, sub2.path})
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
eq_(list(target.get_branch_commits("git-annex")),
list(source.repo.get_branch_commits("git-annex")))
eq_(list(sub1_target.get_branch_commits("master")),
list(sub1.get_branch_commits("master")))
eq_(list(sub1_target.get_branch_commits("git-annex")),
list(sub1.get_branch_commits("git-annex")))
eq_(list(sub2_target.get_branch_commits("master")),
list(sub2.get_branch_commits("master")))
eq_(list(sub2_target.get_branch_commits("git-annex")),
list(sub2.get_branch_commits("git-annex")))
# test for publishing with --since. By default since no changes, only current pushed
res_ = publish(dataset=source, recursive=True)
# only current one would get pushed
eq_(set(r.path for r in res_[0]), {src_path})
# all get pushed
res_ = publish(dataset=source, recursive=True, since='HEAD^')
eq_(set(r.path for r in res_[0]), {src_path, sub1.path, sub2.path})
# Let's now update one subm
with open(opj(sub2.path, "file.txt"), 'w') as f:
f.write('')
sub2.add('file.txt')
sub2.commit("")
# TODO: Doesn't work: https://github.com/datalad/datalad/issues/636
#source.save("changed sub2", auto_add_changes=True)
source.repo.commit("", options=['-a'])
res_ = publish(dataset=source, recursive=True)
# only updated ones were published
eq_(set(r.path for r in res_[0]), {src_path, sub2.path})
def test_publish_with_data(origin, src_path, dst_path, sub1_pub, sub2_pub):
# prepare src
source = install(src_path, source=origin, recursive=True)[0]
source.repo.get('test-annex.dat')
# create plain git at target:
target = AnnexRepo(dst_path, create=True)
target.checkout("TMP", ["-b"])
source.repo.add_remote("target", dst_path)
# now, set up targets for the submodules:
sub1_target = GitRepo(sub1_pub, create=True)
sub1_target.checkout("TMP", ["-b"])
sub2_target = GitRepo(sub2_pub, create=True)
sub2_target.checkout("TMP", ["-b"])
sub1 = GitRepo(opj(src_path, 'subm 1'), create=False)
sub2 = GitRepo(opj(src_path, 'subm 2'), create=False)
sub1.add_remote("target", sub1_pub)
sub2.add_remote("target", sub2_pub)
# TMP: Insert the fetch to prevent GitPython to fail after the push,
# because it cannot resolve the SHA of the old commit of the remote,
# that git reports back after the push.
# TODO: Figure out, when to fetch things in general; Alternatively:
# Is there an option for push, that prevents GitPython from failing?
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['test-annex.dat'])
eq_(res, ([source, 'test-annex.dat'], []))
eq_(list(target.get_branch_commits("master")),
list(source.repo.get_branch_commits("master")))
# TODO: last commit in git-annex branch differs. Probably fine,
# but figure out, when exactly to expect this for proper testing:
eq_(list(target.get_branch_commits("git-annex"))[1:],
list(source.repo.get_branch_commits("git-annex"))[1:])
# we need compare target/master:
target.checkout("master")
eq_(target.file_has_content(['test-annex.dat']), [True])
source.repo.fetch("target")
res = publish(dataset=source, to="target", path=['.'])
eq_(res, ([source, 'test-annex.dat'], []))
source.repo.fetch("target")
import glob
res = publish(dataset=source, to="target", path=glob.glob1(source.path, '*'))
# Note: This leads to recursive publishing, since expansion of '*'
# contains the submodules themselves in this setup
# collect result paths:
result_paths = []
for item in res[0]:
if isinstance(item, Dataset):
result_paths.append(item.path)
else:
result_paths.append(item)
eq_({source.path, opj(source.path, "subm 1"),
opj(source.path, "subm 2"), 'test-annex.dat'},
set(result_paths))