def test_install_miniconda_conda_env_venv_datalad(tmp_path):
venv_path = tmp_path / "venv"
miniconda_path = tmp_path / "conda"
r = main(
[
"datalad_installer.py",
"miniconda",
"--batch",
"--path",
str(miniconda_path),
"conda-env",
"-n",
"foo",
"venv",
"--path",
str(venv_path),
"datalad",
]
)
assert r == 0
assert (venv_path / bin_path("python")).exists()
assert (venv_path / bin_path("datalad")).exists()
assert (miniconda_path / bin_path("conda")).exists()
assert not (miniconda_path / bin_path("datalad")).exists()
assert (miniconda_path / "envs" / "foo").exists()
assert not (miniconda_path / "envs" / "foo" / bin_path("datalad")).exists()
def test_install_miniconda_autogen_path(monkeypatch):
# Override TMPDIR with a path that will be cleaned up afterwards (We can't
# use tmp_path here, as that's apparently always in the user temp folder on
# Windows regardless of the external value of TMPDIR.)
with tempfile.TemporaryDirectory() as newtmp:
monkeypatch.setenv("TMPDIR", newtmp)
tempfile.tempdir = None # Reset cache
r = main(
[
"datalad_installer.py",
"miniconda",
"--batch",
]
)
assert r == 0
(miniconda_path,) = Path(newtmp).glob("dl-miniconda-*")
assert (miniconda_path / bin_path("conda")).exists()
r = subprocess.run(
[str(miniconda_path / bin_path("conda")), "create", "-n", "test", "-y"],
stdout=subprocess.PIPE,
universal_newlines=True,
check=True,
)
assert "conda activate test" in r.stdout
tempfile.tempdir = None # Reset cache
def test_install_venv_datalad(tmp_path):
venv_path = tmp_path / "venv"
r = main(
[
"datalad_installer.py",
"venv",
"--path",
str(venv_path),
"datalad",
]
)
assert r == 0
assert (venv_path / bin_path("python")).exists()
assert (venv_path / bin_path("datalad")).exists()
def test_install_miniconda_datalad(tmp_path):
miniconda_path = tmp_path / "conda"
r = main(
[
"datalad_installer.py",
"miniconda",
"--batch",
"--path",
str(miniconda_path),
"datalad",
]
)
assert r == 0
assert (miniconda_path / bin_path("conda")).exists()
assert (miniconda_path / bin_path("datalad")).exists()
def test_install_miniconda(tmp_path):
miniconda_path = tmp_path / "conda"
r = main(
[
"datalad_installer.py",
"miniconda",
"--batch",
"--path",
str(miniconda_path),
]
)
assert r == 0
assert (miniconda_path / bin_path("conda")).exists()
r = subprocess.run(
[str(miniconda_path / bin_path("conda")), "create", "-n", "test", "-y"],
stdout=subprocess.PIPE,
universal_newlines=True,
check=True,
)
assert "conda activate test" in r.stdout
def test_install_neurodebian_sudo_ok(mocker):
spy = mocker.spy(datalad_installer, "runcmd")
r = main(["datalad_installer.py", "--sudo=ok", "neurodebian"])
assert r == 0
assert spy.call_args_list[-2] == mocker.call(
"sudo", "apt-get", "install", "-qy", "neurodebian", env=mocker.ANY
)
assert spy.call_args_list[-2][1]["env"]["DEBIAN_FRONTEND"] == "noninteractive"
assert spy.call_args_list[-1] == mocker.call("nd-configurerepo")
r = subprocess.run(
[
"dpkg-query",
"-Wf",
"${db:Status-Abbrev}",
"neurodebian",
],
stdout=subprocess.PIPE,
universal_newlines=True,
check=True,
)
assert r.stdout == "ii "
def test_install_env_write_file_miniconda_conda_env(tmp_path):
env_write_file = tmp_path / "env.sh"
miniconda_path = tmp_path / "conda"
r = main(
[
"datalad_installer.py",
"-E",
str(env_write_file),
"miniconda",
"--batch",
"--path",
str(miniconda_path),
"conda-env",
"-n",
"foo",
]
)
assert r == 0
assert (miniconda_path / bin_path("conda")).exists()
assert (miniconda_path / "envs" / "foo").exists()
ewf_path = str(env_write_file)
if ON_WINDOWS:
ewf_path = "/" + ewf_path.replace("\\", "/").replace(":", "", 1)
bash = r"C:\Program Files\Git\bin\bash.EXE"
else:
bash = "bash"
r = subprocess.run(
[
bash,
"-c",
f"source {shlex.quote(ewf_path)} && conda info --json",
],
stdout=subprocess.PIPE,
universal_newlines=True,
check=True,
)
info = json.loads(r.stdout)
assert info["active_prefix_name"] == "foo"
assert info["conda_prefix"] == str(miniconda_path)
def test_install_git_annex_brew(mocker):
spy = mocker.spy(datalad_installer, "runcmd")
r = main(["datalad_installer.py", "git-annex", "-m", "brew"])
assert r == 0
assert spy.call_args_list[-1] == mocker.call("brew", "install", "git-annex")
assert shutil.which("git-annex") is not None