def get_from_query_gds_in_pmc_fulltext_dict(id_type, pmc_query, geo_year=None):
ids = geo.get_ids_by_year(id_type, geo_year)
ids.sort()
response_dict = get_dict_submit_reuse_of_accession_in_pmc_fulltext(
id_type, ids, pmc_query)
return (response_dict)
def get_from_query_gds_in_pmc_fulltext_dict(id_type, pmc_query, geo_year=None):
ids = geo.get_ids_by_year(id_type, geo_year)
ids.sort()
response_dict = get_dict_submit_reuse_of_accession_in_pmc_fulltext(id_type, ids, pmc_query)
return(response_dict)
fh.close()
updated_base_query_all = """("1901"[PubDate] : "2011/12/31"[PubDate])"""
updated_base_query_reuse = """("1901"[PubDate] : "2011/12/31"[PubDate]) NOT "pmc gds"[filter]"""
updated_base_query_create = """("1901"[PubDate] : "2011/12/31"[PubDate]) AND "pmc gds"[filter]"""
if True:
fh = open("scienceplot_new/results/pubmed_gse_count.csv", "w")
num_id_fields = ["year", "num_gse_ids"]
writer = csv.DictWriter(fh, num_id_fields)
writer.writerow(dict((fn, fn) for fn in writer.fieldnames))
total_count = 0
for id_type in ["GSE"]:
id_count = 0
for year in geo_years:
ids = geo.get_ids_by_year(id_type, year)
row_dict = dict(year=year, num_gse_ids=len(ids))
print row_dict.values()
writer.writerow(row_dict)
id_count += len(ids)
print id_type, id_count
total_count += id_count
print total_count
fh.close()
year = "2009"
#submission_years = [str(year) for year in range(2007,2008)]
submission_years = [year]
all_dict = run_stats(submission_years, id_types, updated_base_query_all)
if True:
fh.close()
updated_base_query_all = """("1901"[PubDate] : "2011/12/31"[PubDate])"""
updated_base_query_reuse = """("1901"[PubDate] : "2011/12/31"[PubDate]) NOT "pmc gds"[filter]"""
updated_base_query_create = """("1901"[PubDate] : "2011/12/31"[PubDate]) AND "pmc gds"[filter]"""
if True:
fh = open("scienceplot_new/results/pubmed_gse_count.csv", "w")
num_id_fields = ["year", "num_gse_ids"]
writer = csv.DictWriter(fh, num_id_fields)
writer.writerow(dict((fn,fn) for fn in writer.fieldnames))
total_count = 0
for id_type in ["GSE"]:
id_count = 0
for year in geo_years:
ids = geo.get_ids_by_year(id_type, year)
row_dict = dict(year=year, num_gse_ids=len(ids))
print row_dict.values()
writer.writerow(row_dict)
id_count += len(ids)
print id_type, id_count
total_count += id_count
print total_count
fh.close()
year = "2009"
#submission_years = [str(year) for year in range(2007,2008)]
submission_years = [year]
all_dict = run_stats(submission_years, id_types, updated_base_query_all)
