def test_id_field_changes_correct_for_repeat_conversions():
settings = {
'Study': {
'AND01': 'ANDT'
},
'Site': {
'UTO': 'CMH'
},
'Subject': {
'^(0001|0002)->H\\1': '^H([0-9]+)->\\1'
}
}
correct_kcni = "AND01_UTO_0001_01_SE01_MR"
correct_datman = "ANDT_CMH_H0001_01_01"
# KCNI to datman and back
kcni_ident = scanid.parse(correct_kcni, settings)
dm_ident = scanid.parse(str(kcni_ident), settings)
assert str(dm_ident) == correct_datman
new_kcni = scanid.get_kcni_identifier(dm_ident, settings)
assert new_kcni.orig_id == correct_kcni
# Datman to KCNI and back
dm_ident = scanid.parse(correct_datman, settings)
kcni_ident = scanid.get_kcni_identifier(dm_ident, settings)
assert kcni_ident.orig_id == correct_kcni
new_dm = scanid.parse(str(kcni_ident), settings)
assert str(new_dm) == correct_datman
def test_get_kcni_identifier_handles_already_kcni():
kcni = "ABC01_UTO_12345678_01_SE02_MR"
kcni_ident = scanid.parse(kcni)
kcni1 = scanid.get_kcni_identifier(kcni)
assert isinstance(kcni1, scanid.KCNIIdentifier)
assert kcni1.orig_id == kcni
kcni2 = scanid.get_kcni_identifier(kcni_ident)
assert isinstance(kcni2, scanid.KCNIIdentifier)
assert kcni2.orig_id == kcni
def test_get_kcni_identifier_from_datman_with_field_changes():
settings = {"STUDY": {"AND01": "ANDT"}, "SITE": {"UTO": "CMH"}}
kcni = scanid.get_kcni_identifier("ANDT_CMH_0001_01_01", settings)
assert kcni.study == "ANDT"
assert kcni.site == "CMH"
assert kcni.orig_id == "AND01_UTO_0001_01_SE01_MR"
kcni_pha = scanid.get_kcni_identifier("ANDT_CMH_PHA_FBN0023", settings)
assert kcni_pha.study == "ANDT"
assert kcni_pha.site == "CMH"
assert kcni_pha.orig_id == "AND01_UTO_FBNPHA_0023_MR"
def test_get_kcni_identifier_correctly_reverses_subject_field_changes():
settings = {
'Subject': {
'(100001|100002)->H\\1': '^H([0-9]+)->\\1'
}
}
kcni = scanid.get_kcni_identifier("ABC01_CMH_H100001_01_01", settings)
assert kcni.subject == "H100001"
assert kcni.orig_id == "ABC01_CMH_100001_01_SE01_MR"
kcni = scanid.get_kcni_identifier("ABC01_CMH_PHA_FBN201013", settings)
assert kcni.subject == "PHA_FBN201013"
assert kcni.orig_id == "ABC01_CMH_FBNPHA_201013_MR"
def test_kcni_converted_to_datman_and_back_is_unmodified():
orig_kcni = 'SPN01_CMH_0001_01_SE01_MR'
kcni_ident = scanid.parse(orig_kcni)
datman = scanid.parse(str(kcni_ident))
assert isinstance(datman, scanid.DatmanIdentifier)
new_kcni = scanid.get_kcni_identifier(datman)
assert new_kcni.orig_id == orig_kcni
def test_datman_converted_to_kcni_and_back_is_unmodified():
orig_datman = 'SPN01_CMH_0001_01_01'
dm_ident = scanid.parse(orig_datman)
kcni = scanid.get_kcni_identifier(dm_ident)
assert isinstance(kcni, scanid.KCNIIdentifier)
new_datman = scanid.parse(str(kcni))
assert str(new_datman) == orig_datman
def test_get_kcni_identifier_from_datman_pha_ident():
dm_ident = scanid.parse("OPT01_UTO_PHA_ADN0001")
kcni_ident = scanid.get_kcni_identifier(dm_ident)
assert isinstance(kcni_ident, scanid.KCNIIdentifier)
assert kcni_ident.orig_id == "OPT01_UTO_ADNPHA_0001_MR"
def test_get_kcni_identifier_from_datman_ident():
ident = scanid.parse("SPN01_CMH_0001_01_01")
kcni_ident = scanid.get_kcni_identifier(ident)
assert isinstance(kcni_ident, scanid.KCNIIdentifier)
assert kcni_ident.orig_id == "SPN01_CMH_0001_01_SE01_MR"
def test_get_kcni_identifier_from_datman_date_based_pha_str():
kcni_ident = scanid.get_kcni_identifier("OPT01_UTO_PHA_FBN190603")
assert isinstance(kcni_ident, scanid.KCNIIdentifier)
assert kcni_ident.orig_id == "OPT01_UTO_FBNPHA_190603_MR"
def test_get_kcni_identifier_from_datman_pha_str():
kcni_ident = scanid.get_kcni_identifier("ABC01_CMH_PHA_FBN0001")
assert isinstance(kcni_ident, scanid.KCNIIdentifier)
assert kcni_ident.orig_id == "ABC01_CMH_FBNPHA_0001_MR"
def test_get_kcni_identifier_from_datman_str():
kcni_ident = scanid.get_kcni_identifier("ABC01_UTO_12345678_01_02")
assert isinstance(kcni_ident, scanid.KCNIIdentifier)
assert kcni_ident.orig_id == "ABC01_UTO_12345678_01_SE02_MR"
