def create1Log(self, wellId, session=None):
logger.debug(">>create3Logs() well id: " + str(wellId))
localSession = False
if session == None:
session = DM.getSession()
localSession = True
log1 = Log()
log1.name = "SWIRR"
log1.log_type_name = LogType.SATURATION.name
log1.z_measure_type_name = "MD"
log1.z_measure_min = 0.0
log1.z_measure_max = 2000.0
log1.z_measure_step = 0.1524
log1.log_data_str = BaseDao.convertDataToJSON(
[0.378425, 0.381605, 0.397528])
log1.z_measure_data_str = BaseDao.convertDataToJSON([102, 103, 104])
log1.well_id = wellId
self.setPreferences(log1, session)
session.add(log1)
session.commit()
dummyLog = session.query(Log).filter(Log.name == 'SWIRR').one()
assert "SWIRR" == dummyLog.name
assert wellId == dummyLog.well_id
allLogs = session.query(Log).all()
if localSession:
session.close()
return allLogs
def execute(self, session, treeview, explorer, ids, tablename,
treedescription, **kargs):
logger.debug("WellPlot --execute()")
session = DM.getSession()
selectedLogSet = None
if tablename.title() == "Well":
if len(ids) > 1:
logger.info("Plotting first selected well")
selectedWell = WellDao.getWell(ids[0], session)
logs = LogDao.getWellLogs(ids[0], session)
elif tablename.title() == "Log_Set":
if len(ids) > 1:
logger.info("Plotting first selected log set")
selectedWell = WellDao.getWell(ids[0], session)
selectedLogSet = LogSetDao.getLogSet(ids[0], session)
logs = LogDao.getLogSetLogs(ids[0], session)
session.close()
if (logs != None) and (selectedWell != None):
#need to connect WellPlotMPL to main application so can receive signals
#centralTabWidget = CentralTabWidget()
wellPlotSetupDialog = WellPlotSetupDialog(logs,
well=selectedWell,
logSet=selectedLogSet)
wellPlotSetupDialog.exec_()
'''
settings = RendererSettings()
if settings.plotRenderer == PlotRenderer.pyqtgraph:
wellPlotPyQtGraph = WellPlotPG(logs, well = selectedWell, logSet = selectedLogSet, parent = centralTabWidget)
elif settings.plotRenderer == PlotRenderer.matplotlib:
wellPlot = WellPlotMPL(logs, well = selectedWell, logSet = selectedLogSet, parent = centralTabWidget)
'''
else:
logger.warn("Error getting data from database, cannot plot logs")
explorer.refresh()
def test_write(self):
logger.debug("--test_write() ")
DM.init_db()
session = DM.getSession()
well = Well()
well.name = "Hampo"
well.depth_reference = "MDKB"
well.elevation_of_depth_reference = "24.0"
session.add(well)
session.commit()
logger.debug("--test_write() id: " + str(well.id))
dummy = session.query(Well).filter(Well.name == 'Hampo').one()
logger.debug("--test_write() dummy: " + str(dummy.name) + " object: " +
str(dummy))
self.assertEqual("Hampo", dummy.name)
session.close()
def getZAxisPriority(self):
''' Retrieves lit of z measure track priorities from db on first call and stores them here
eg MDKB highest priority followed by TVDSS etc..'''
if (len(self.z_axis_track_priority) == 0):
logger.debug("--getZAxisPriority() getting domain track priorities from DB")
session = DM.getSession()
self.z_axis_track_priority = LogTrackDataDao.convertJSONtoData(self.z_axis_priority_str)
return self.z_axis_track_priority
def getLogTrackDatas(self):
''' Retrieves lit of sub-plots from db on first call and stores them here '''
if (len(self._log_track_datas) == 0) and (self._log_track_ids != ""):
logger.debug("--getLogTrackDatas() getting sub_plots from DB")
session = DM.getSession()
subPlotIdList = LogTrackDataDao.convertJSONtoData(self._log_track_ids)
self._log_track_datas = LogTrackDataDao.getLogTrackDatasFromIds(subPlotIdList, session)
return self._log_track_datas
def getZAxisDatas(self):
''' Retrieves lit of _z_axis_track_datas from db on first call and stores them here '''
if (len(self._z_axis_track_datas) == 0) and (self._z_axis_track_ids != ""):
session = DM.getSession()
domainDataIdList = BaseDao.convertJSONtoData(self._z_axis_track_ids)
domainTrackData = ZAxisDataDao()
self._z_axis_track_datas = domainTrackData.getDomainTrackDatasFromIds(domainDataIdList, session)
return self._z_axis_track_datas
def getLogs(self):
''' Retrieves lit of logs from db on first call and stores them here '''
if (len(self._logs)
== 0) and (self.log_ids != None) and (self.log_ids != ""):
session = DM.getSession()
logIdList = (self.log_ids).split(",")
self._logs = LogDao.getLogsFromIds(logIdList, session)
session.close()
return self._logs
def finishClicked(self):
logger.debug(">>finishClicked()")
#Save the finish page (Parameters atm)
try:
#Note that Id has not been incremented unlike Next
page = self.page(self.currentId())
logger.debug(str("--saveOnNext() name: " + page.objectName()))
page.populateObject()
#TODO start main ui progress bar to busy
lasPersister = LasPersister(self._session)
lasPersister.dispatchDataWriters(self._reader, True)
if lasPersister.committedOK:
#send signal for tree update
DM.databaseModified()
self._session.close()
except:
logger.error("Could not save page " + str(self.currentId()))
self._errorOnSave = True
finally:
self._session.close()
def test_findLogWithLargestDepthRange(self):
#QWidget: Must construct a QApplication before a QPaintDevice
app = QApplication(sys.argv)
self.dummyDbSetup = DummyDbSetup()
self.dummyDbSetup.setupDatabase()
session = DM.getSession()
well = self.dummyDbSetup.createWell()
logs = self.dummyDbSetup.create3VariableDepthLogs(well.id)
log = Log()
longestLog = log.findLogWithLargestDepthRange(logs)
self.assertEqual("3SP", longestLog.name)
def createWell(self, mdstart, mdstop, wellName):
logger.debug(">>createWell() ")
session = DM.getSession()
well = Well()
well.name = wellName
well.depth_reference = "MDKB"
well.elevation_of_depth_reference = "24.0"
well.mdstart = mdstart
well.mdstop = mdstop
session.add(well)
session.commit()
dummyWell = session.query(Well).filter(Well.name == wellName).one()
assert wellName == dummyWell.name
session.close()
return dummyWell
def execute(self, session, treeview, explorer, ids, tablename,
treedescription, **kargs):
logger.debug("Settings --execute()")
session = DM.getSession()
if tablename.title() == "Well":
if len(ids) > 1:
logger.info("Settings for first well selected")
rs = session.query(Well).filter(Well.id == ids[0])
assert rs.count() == 1
for well in rs:
logger.debug("--plotLogs() well: " + str(well.name))
dialog = WellSettingsDialog(well)
dialog.exec_()
session.close()
explorer.refresh()
def setPreferences(self, log, session=None):
localSession = False
if session == None:
session = DM.getSession()
localSession = True
logType = LogType.getLogType(log.log_type_name)
log_type_uid = logType.getUid()
logCurveDefaults = LogCurvePreferencesDao.getLogCurvePreferences(
log_type_uid, session)
if logCurveDefaults == None:
#no preferences set yet, use defaults
logCurveDefaults = LogCurvePreferencesDao.getLogCurveDefaults(
log_type_uid, session)
assert logCurveDefaults is not None
log.log_plot_left = logCurveDefaults.log_plot_left
log.log_plot_right = logCurveDefaults.log_plot_right
log.log_plot_default = logCurveDefaults.log_plot_default
log.log_plot_points_on = logCurveDefaults.log_plot_points_on
log.histogram_left = logCurveDefaults.histogram_left
log.histogram_right = logCurveDefaults.histogram_right
log.histogram_default = logCurveDefaults.histogram_default
log.cross_plot_left = logCurveDefaults.cross_plot_left
log.cross_plot_right = logCurveDefaults.cross_plot_right
log.cross_plot_default = logCurveDefaults.cross_plot_default
log.line_width = logCurveDefaults.line_width
log.line_style = logCurveDefaults.line_style
log.point_size = logCurveDefaults.point_size
log.point_style = logCurveDefaults.point_style
log.rgb = logCurveDefaults.rgb
log.alpha = logCurveDefaults.alpha
log.is_logarithmic = logCurveDefaults.is_logarithmic
if logCurveDefaults.is_logarithmic:
log.log_plot_log_cycles = logCurveDefaults.log_plot_log_cycles
log.z_measure_type_name = "MD"
#duplication - but makes simpler if want to change log down track
log.z_measure_reference = "KB"
if localSession:
session.close()
def test_updateWellStartStop(self, mock_class):
logger.debug(">>test_updateWellStartStop()")
#self.dummyDbSetup = DummyDbSetup()
self.dummyDbSetup.setupDatabase()
session = DM.getSession()
well = self.dummyDbSetup.createWell(session)
logs = self.dummyDbSetup.create3Logs(well.id, session)
data = BaseDao.convertJSONtoData(logs[0].log_data_str)
logData = np.empty((len(logs), len(data)))
domainId = 0
for i, log in enumerate(logs):
if i == 0:
domainId = log.log_domain_id
data = BaseDao.convertJSONtoData(log.log_data_str)
for j, sample in enumerate(data):
logData[i][j] = sample
log.importLog = True
dataTest = logData[1,:]
lasPersister = LasPersister(session)
lasReader = LasReader()
lasReader.logList = logs
lasReader._logs = logData
lasPersister._logSetId = 1
lasPersister._logServiceId = 1
#TODO log domain needs to be created with dumy DB
logDomain = LogDomainDao.getLogDomain( domainId, session)
self.assertNotEqual(None, logDomain, "Sould not be None")
lasPersister._logDomainId = logDomain.id
lasReader.logDomain = logDomain
logger.debug("well.mdstart:{0}, well.mdstop:{1}, logDomain.log_start:{2}, logDomain.log_stop:{3}".format(well.mdstart, well.mdstop, logDomain.log_start, logDomain.log_stop))
lasPersister._lasReader = lasReader
lasPersister._wellId = well.id
lasPersister.writeLogData()
allLogs = session.query(Log).all()
for log in allLogs:
logger.debug("--test_updateWellStartStop() post write log data id:{0}, name:{1}".format(log.id, log.name))
session.close()
def __init__(self, fileName, parent=None):
logger.debug("__init__() " + str(fileName))
super(ImportLasWizard, self).__init__(parent)
self.setObjectName("importLasWizard")
#default wizard anyway
#self.setupUi(self)
#holder for radio button selection state -instead of registerField
self._importAllData = False
self._wellExistsInDB = False
#if error saving an object quit wizard
self._errorOnSave = False
self._reader = LasReader()
self._fileName = fileName
self._session = DM.getSession()
self.checkIfWellExistsInDB()
self.setWindowTitle("Import .las data wizard")
self.resize(640, 480)
#slot handling the next button, but disconnect the default slot first
#see http://stackoverflow.com/questions/11155494/handling-cancellation-on-a-wizard-page
#self.disconnect(self.button(QWizard.NextButton), QtCore.SIGNAL('clicked()'), self, QtCore.SLOT('next()'))
if fileName is not None:
#plotter=totaldepth.PlotLogs
#plotter.mockPlot()
self.readFile()
#las_info = lasio.pylasdev.las_reader.read_las_file(str(fileName))
if len(self._reader.logList) == 0:
self.NextButton.setEnabled(False)
self.BackButton.setEnabled(False)
logger.info("Cannot populate dialog, log list is empty")
else:
self.addPage(ImportLasWizardPage(self._reader.logList, self))
self.addPage(WellLasWizardPage(self._reader.well, self))
self.addPage(LogServiceWizardPage(self._reader, self))
self.addPage(ParameterLasWizardPage(self._reader, self))
else:
logger.info("Cannot populate dialog, filename is empty")
self.connectSlots()
def test_writeLogData(self, mock_class):
logger.debug(">>test_writeLogData()")
#self.dummyDbSetup = DummyDbSetup()
self.dummyDbSetup.setupDatabase()
session = DM.getSession()
well = self.dummyDbSetup.createWell(session)
logs = self.dummyDbSetup.create3Logs(well.id, session)
data = BaseDao.convertJSONtoData(logs[0].log_data_str)
logData = np.empty((len(logs), len(data)))
for i, log in enumerate(logs):
data = BaseDao.convertJSONtoData(log.log_data_str)
for j, sample in enumerate(data):
logData[i][j] = sample
log.importLog = True
dataTest = logData[1,:]
lasPersister = LasPersister(session)
lasReader = LasReader()
lasReader.logList = logs
lasReader._logs = logData
lasPersister._logSetId = 1
lasPersister._logServiceId = 1
#TODO log domain needs to be created with dumy DB
logDomain = LogDomainDao.getLogDomain(log.log_domain_id, session)
lasPersister._logDomainId = logDomain.id
lasReader.logDomain = logDomain
lasPersister._lasReader = lasReader
lasPersister._wellId = well.id
lasPersister._lasModel = lasReader.lasModel
lasRounding = 4
lasPersister._lasImportLogicModel = LasImportLogicModel()
lasPersister.writeLogData(lasPersister._lasModel, lasPersister._lasImportLogicModel, lasRounding)
allLogs = session.query(Log).all()
for log in allLogs:
logger.debug("--test_writeLogData() post write log data id:{0}, name:{1}".format(log.id, log.name))
session.close()
def createWell(self, session=None):
logger.debug(">>createWell() ")
localSession = False
if session == None:
session = DM.getSession()
localSession = True
wells = WellDao.getAllWells(session)
if len(wells) > 0:
for well in wells:
logger.debug("existing wells:{0}".format(well.name))
assert 0 == len(wells)
#timeStamp = TimeUtils.getTimeInMilliSecs()
well = Well()
well.name = "test_well"
well.depth_reference = "MDKB"
well.elevation_of_depth_reference = "24.0"
session.add(well)
session.commit()
dummyWell = session.query(Well).filter(Well.name == 'test_well').one()
assert "test_well" == dummyWell.name
if localSession:
session.close()
return dummyWell
def __init__(
self,
parent=None,
#dbinfo = None,
settings=None,
name=None,
context_menu=context_menu,
):
QWidget.__init__(self, parent)
#self.dbinfo = dbinfo
self._session = DM.getSession()
#here is where we connect database modified signal to refresh slot
DM.databaseModifiedSignal.connect(self.refresh)
self.name = name
self.context_menu = context_menu
self.mainLayout = QVBoxLayout()
self.setLayout(self.mainLayout)
self.listTreeDescription = get_standard_treeview()
self.settings = settings
'''
if self.settings is not None and self.name is not None:
self.listTreeDescription = self.settings.getValueOrDefault('/listTreeDescription'+self.name, self.listTreeDescription)
for td in self.listTreeDescription:
td.check_and_complete(self.dbinfo)
'''
self.tabViews = QTabWidget()
self.mainLayout.addWidget(self.tabViews)
self.setObjectName("mainExplorer")
self.createAction()
self.createConfigureMenu()
self.deepRefresh()
def test_init_db(self):
logger.debug(">>test_init_db")
#DM.getBase()
DM.init_db()
def setupDatabase(self):
''' re-create database for each test method '''
logger.debug(">>setupDatabase() ")
DM.init_db()
#need to create defaults as required by plotting - this hard codes all as default, TODO make it flexible
defaultsInitialiser = DefaultsInitialiser()
def startDatabase(self):
logger.debug(">>startDatabase()")
if not DM.init_db():
logger.debug("Exiting application")
sys.exit(app.exec_())
'''
def getSession(cls):
session = DM.getSession()
return session
def test_getSession(self):
logger.debug(">>test_getSession")
DM.init_db()
session = DM.getSession()
session.close()
def create3Logs(self, wellId, session=None):
logger.debug(">>create3Logs() well id: " + str(wellId))
localSession = False
if session == None:
session = DM.getSession()
localSession = True
logDomain = LogDomain()
logDomain.z_measure_type_name = "MD"
logDomain.log_start = 0.0
logDomain.log_step = 0.1524
logDomain.log_stop = 1000.0
session.add(logDomain)
session.flush()
logDomainId = logDomain.id
log1 = Log()
log1.name = "LWD_GR"
log1.log_type_name = LogType.GAMMA.name
log1.z_measure_type_name = "MD"
log1.z_measure_min = 0.0
log1.z_measure_max = 1000.0
log1.z_measure_step = 0.1524
log1.log_data_str = BaseDao.convertDataToJSON(
[0.378425, 0.381605, 0.397528])
log1.z_measure_data_str = BaseDao.convertDataToJSON([102, 103, 104])
#log1.rgb="100,100,100"
#log1.alpha="255"
#log1.log_plot_points_on = False
log1.well_id = wellId
log1.log_domain_id = logDomainId
log2 = Log()
log2.name = "2DT"
log2.log_type_name = LogType.DT.name
log2.z_measure_type_name = "MD"
log2.z_measure_min = 0.0
log2.z_measure_max = 1000.0
log2.z_measure_step = 0.1524
log2.log_data_str = BaseDao.convertDataToJSON(
[0.378425, 0.381605, 0.397528])
log2.z_measure_data_str = BaseDao.convertDataToJSON([102, 103, 104])
#log2.rgb="100,100,100"
#log2.alpha="255"
#log2.log_plot_points_on = False
log2.well_id = wellId
log2.log_domain_id = logDomainId
log3 = Log()
log3.name = "3SP"
log3.log_type_name = LogType.SP.name
log3.z_measure_type_name = "MD"
log3.z_measure_min = 0.0
log3.z_measure_max = 1000.0
log3.z_measure_step = 0.1524
log3.log_data_str = BaseDao.convertDataToJSON(
[0.378425, 0.381605, 0.397528])
log3.z_measure_data_str = BaseDao.convertDataToJSON([102, 103, 104])
#log3.rgb="100,100,100"
#log3.alpha="255"
#log3.log_plot_points_on = False
log3.well_id = wellId
log3.log_domain_id = logDomainId
self.setPreferences(log1, session)
self.setPreferences(log2, session)
self.setPreferences(log3, session)
session.add(log1)
session.add(log2)
session.add(log3)
session.commit()
dummyLog = session.query(Log).filter(Log.name == 'LWD_GR').one()
assert "LWD_GR" == dummyLog.name
assert wellId == dummyLog.well_id
allLogs = session.query(Log).all()
if localSession:
session.close()
return allLogs
def getYData(self):
''' Retrieves lit of yData from db on first call and stores it here '''
if (len(self.y_data) == 0) and (self.y_data_string != ""):
session = DM.getSession()
self.y_data = BaseDao.convertJSONtoData(self.y_data_string)
return self.y_data