def testPrivate1(self):
"""private dict: """
self.assert_(CleanName(0x00100010) == "PatientsName")
self.assert_(CleanName(Tag((0x0010, 0x0010))) == "PatientsName")
def testTagNotFound(self):
"""dicom_dictionary: CleanName returns blank string for unknown tag"""
self.assert_(CleanName(0x99991111) == "")
def testCleanName(self):
"""dicom_dictionary: CleanName returns correct strings............."""
self.assert_(CleanName(0x00100010) == "PatientsName")
self.assert_(CleanName(Tag((0x0010, 0x0010))) == "PatientsName")
https://www.aapm.org/GrandChallenge/LowDoseCT/#registration
"""
from __future__ import division
import numpy as np
import os
import dicom
import odl
import tqdm
from dicom.datadict import DicomDictionary, NameDict, CleanName
from odl.contrib.datasets.ct.mayo_dicom_dict import new_dict_items
# Update the DICOM dictionary with the extra Mayo tags
DicomDictionary.update(new_dict_items)
NameDict.update((CleanName(tag), tag) for tag in new_dict_items)
__all__ = ('load_projections', 'load_reconstruction')
def _read_projections(folder, indices):
"""Read mayo projections from a folder."""
datasets = []
# Get the relevant file names
file_names = sorted([f for f in os.listdir(folder) if f.endswith(".dcm")])
if len(file_names) == 0:
raise ValueError('No DICOM files found in {}'.format(folder))
file_names = file_names[indices]
from datetime import datetime
from dicom.datadict import CleanName
from glob import glob
src_dcms = glob("/input/*.dcm")
if len(src_dcms) > 0:
src_dcm = src_dcms[0]
ds = dicom.read_file(src_dcm)
ds.remove_private_tags()
tags = ds.keys()
info = {}
for tag in tags:
element = ds[tag]
if element.VM > 1:
continue
clean_name = CleanName(tag)
if element.VR == "DA":
first_part = clean_name[:-4]
try:
date = datetime.strptime(element.value, '%Y%m%d')
time_name = first_part + "Time"
time_element = ds.data_element(time_name)
time = datetime.strptime(time_element.value,
'%H%M%S.%f').time()
date = datetime.combine(date, time)
info[first_part + "DateTime"] = date.isoformat()
except:
pass
info[clean_name] = element.value
elif element.VR == "PN":
info[clean_name] = str(element.value)
where a block is reserved etc as specified in the DICOM standards.
"""
# D. Mason, 2013-01
from dicom.datadict import DicomDictionary, NameDict, CleanName
from dicom.dataset import Dataset
# Define items as (VR, VM, description, is_retired flag, keyword)
# Leave is_retired flag blank.
new_dict_items = {
0x10011001: ('UL', '1', "Test One", '', 'TestOne'),
0x10011002: ('OB', '1', "Test Two", '', 'TestTwo'),
0x10011003: ('UI', '1', "Test Three", '', 'TestThree'),
}
# Update the dictionary itself
DicomDictionary.update(new_dict_items)
# Update the reverse mapping from name to tag
new_names_dict = dict([(CleanName(tag), tag) for tag in new_dict_items])
NameDict.update(new_names_dict)
# Test that it is working
ds = Dataset() # or could get one from read_file, etc
ds.TestOne = 42
ds.TestTwo = '12345'
ds.TestThree = '1.2.3.4.5'
print(ds.top())