Python KEGG Examples

Example #1

class KEGGTestCase(SourceTestCase):
    def setUp(self):
        self.source = KEGG('rdf_graph', True)
        self.source.disease_ids = self.all_test_ids['disease']
        self.source.settestonly(True)
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

Example #2

File: test_kegg.py Project: DoctorBud/dipper

class KEGGTestCase(SourceTestCase):

    def setUp(self):
        self.source = KEGG('rdf_graph', True)
        self.source.disease_ids = self._get_conf()['test_ids']['disease']
        self.source.settestonly(True)
        self._setDirToSource()
        return

    def tearDown(self):
        self.source = None
        return

Example #3

File: test_kegg.py Project: d3borah/dipper

 def setUp(self):
     self.source = KEGG()
     self.source.disease_ids = self._get_conf()['test_ids']['disease']
     self.source.settestonly(True)
     self.source.setnobnodes(True)
     self._setDirToSource()
     return

Example #4

 def setUp(self):
     self.source = KEGG('rdf_graph', True)
     self.source.disease_ids = self._get_testids['disease']
     self.source.settestonly(True)
     self._setDirToSource()
     return