Example #1
0
 def _test(p):
     data = d.Binomial(N, p)
     Sn = data.sample()
     posterior = prior.update(data, Sn)
     if posterior.cdf(s) < alpha:
         return 1, N, Sn
     # if Sn >= accept:
     #     return 1, N, Sn
     return 0, N, Sn
Example #2
0
 def _test(p):
     n = steps
     Sn = 0
     data = d.Binomial(steps, p)
     while n < N:
         Sn += data.sample()
         if accepts[n] < Sn:
             return 1, n, Sn
         n += step
     return 0, N, Sn
def binomial_value(x, bdy, ET, prior, nsamples=1, reset_cost=0):
    n = bdy.n - nsamples
    posterior = d.posterior(prior, d.Binomial(n, 0), [x])

    if x >= bdy.accept:
        return 0

    # distribution of next <nsample> data points
    new_data = d.Binomial(nsamples, posterior.mean)

    # compute values from borders
    prob_accept = 1-new_data.cdf(bdy.accept - x - 1)
    prob_reject = new_data.cdf(bdy.reject - x)
    value = prob_accept * nsamples + prob_reject * (ET + nsamples + reset_cost)

    # compute intermediate values
    value += sum(new_data.pdf(y - x) * (V + nsamples) for y, V in bdy.values.items())

    return value
def binomial_acceptance(N, s, prior, X=None, alpha=0.05):
    if X == None:
        X = int(s * N)+1

    if X > N:
        return X

    posterior = d.posterior(prior, d.Binomial(N, 0), [X])
    if posterior.cdf(s) < alpha:
        return X
    return binomial_acceptance(N, s, prior, X=X+1, alpha=alpha)
def binomial_msprt_test(p, s, prior, alpha=0.05, N=1000, steps=1):
    Sn = 0
    X = d.Binomial(steps, p)
    for n in range(steps, N + steps, steps):
        Sn += X.sample()
        pval = msprt_pval(beta_binomial_lr(Sn, n, s, prior.a, prior.b))
        if pval < alpha:
            if Sn / n > s:
                return 1, n, Sn
            return -1, n, Sn
    # no outcome after Nmax steps
    return 0, n, Sn
def normal_msprt_test(p, s, prior, alpha=0.05, Nmax=5000, steps=1):
    Sn = 0
    X = d.Binomial(steps, p)
    for n in range(steps, Nmax + 1, steps):
        Sn += X.sample()
        data = d.Gaussian(0, (Sn + p) / (n + 1) * (1 - (Sn + p) / (n + 1)))
        pval = normal_msprt_pval(normal_msprt(Sn / n, n, s, prior, data))
        if pval < alpha:
            if Sn / n > s:
                return 1, n, Sn
            return -1, n, Sn
    # no outcome after Nmax steps
    return 0, n, Sn
def binomial_heuristic(s, prior, N, T, alpha=0.05, beta=0.3):
    boundaries = []
    for n in range(1, N):
        accept = binomial_acceptance(n, s, prior, alpha=alpha)

        target = binomial_acceptance(n + T, s, prior)/(n + T)
        at_current = d.Binomial(n, target)
        reject = at_current.ppf(beta)

        boundaries.append(boundary(n, accept, reject, {}))

    boundaries.append(boundary(N, accept, accept-1, {}))

    return boundaries
def boundary_test(p, boundaries, slack=0):
    Sn = 0
    n = 0

    final_time = boundaries[-1].n
    for bdy in boundaries:
        # number of samples to draw:
        m = bdy.n - n
        X = d.Binomial(m, p).sample()
        Sn += X
        n += m
        if Sn >= bdy.accept:
            return 1, n, Sn
        if Sn <= bdy.reject - slack or n > final_time:
            return 0, n, Sn
    def _test(p):
        posterior = prior
        Sn = 0
        X = d.Binomial(steps, p)
        for n in range(steps, N + steps, steps):
            Y = X.sample()
            Sn += Y
            posterior = d.posterior(posterior, X, [Y])

            # obtain at least 5 samples
            if posterior.cdf(s) < alpha and n > 5:
                return 1, n, Sn
            elif 1 - posterior.cdf(s) < beta:
                return -1, n, Sn

        # no outcome after Nmax steps
        return 0, n, Sn