def prepare_templates():
"""
Templates can probably
:return:
"""
os.makedirs(templates_dir, exist_ok=True)
templates = get_all_templates()
for tkey, template in templates.items():
with open(os.path.join(templates_dir, tkey + ".rst"), "w+") as f:
f.write(prepare_template(tkey, template))
introtext = """\
Templates
###########
These templates are used to configure Cromwell / CWLTool broadly. For more information, visit `Configuring Janis <https://janis.readthedocs.io/en/latest/references/configuration.html#cromwell>`__.
"""
with open(os.path.join(templates_dir, "index.rst"), "w+") as f:
f.write(introtext + get_toc(
title="",
intro_text="List of templates for ``janis-assistant``:",
subpages=list(templates.keys()),
))
def prepare_runner_templates():
"""
Templates can probably
:return:
"""
os.makedirs(templates_dir, exist_ok=True)
templates = get_all_templates()
for tkey, template in templates.items():
with open(os.path.join(templates_dir, tkey + ".rst"), "w+") as f:
f.write(prepare_template(tkey, template))
introtext = """\
Templates
###########
This document containers the templates available to Janis by default. These are used
to configure Cromwell to execute across a number of compute environments.
Janis can be configured to submit to an existing Cromwell instance (including on GCP) with:
.. code-block:: bash
urlwithport="127.0.0.1:8000"
janis run --engine cromwell --cromwell-url $urlwithport hello
"""
with open(os.path.join(templates_dir, "index.rst"), "w+") as f:
f.write(introtext + get_toc(
title="",
intro_text="List of templates for ``janis-assistant``:",
subpages=list(templates.keys()),
))