def fetch_and_print_taxon(ws_url='https://ci.kbase.us/services/ws/'):
"""Fetch Taxon from Workspace Service.
Args:
ws_url (str): a service address or a local directory
containing a downloaded version of the data created with the
``dump_wsfile`` utility.
"""
# Initialize API with target object
taxon_ref = 'ReferenceTaxons/242159_taxon'
# Try to connect to remote service
taxon = TaxonAPI(token=os.environ.get('KB_AUTH_TOKEN'), ref=taxon_ref,
services={'workspace_service_url': ws_url})
# Now the methods of the instance can be used to fetch and show
# taxonomic information
print('Got taxon "{} ({})"'.format(taxon.get_scientific_name(),
taxon.get_taxonomic_id()))
def fetch_and_print_taxon(ws_url='https://ci.kbase.us/services/ws/'):
"""Fetch Taxon from Workspace Service.
Args:
ws_url (str): a service address or a local directory
containing a downloaded version of the data created with the
``dump_wsfile`` utility.
"""
# Initialize API with target object
taxon_ref = 'ReferenceTaxons/242159_taxon'
# Try to connect to remote service
taxon = TaxonAPI(token=os.environ.get('KB_AUTH_TOKEN'),
ref=taxon_ref,
services={'workspace_service_url': ws_url})
# Now the methods of the instance can be used to fetch and show
# taxonomic information
print('Got taxon "{} ({})"'.format(taxon.get_scientific_name(),
taxon.get_taxonomic_id()))
def get_taxonomic_id(self, token=None, ref=None):
taxon_api = TaxonAPI(self.services, token, ref)
return taxon_api.get_taxonomic_id()
def get_taxonomic_id(self, token=None, ref=None):
try:
taxon_api = TaxonAPI(self.services, token, ref)
return taxon_api.get_taxonomic_id()
except Exception, e:
raise ttypes.ServiceException(e.message, traceback.print_exc(), "get_taxonomic_id", {"ref": str(ref)})
