def download_all_data(self):
"""Download all large data sets from Synapse"""
pb = progress_bar(5)
# load the large gold standard file from D5C2 synapse main page
filename = self._download_data('DREAM5_GoldStandard_probes.zip',
'syn2898469')
pb.animate(1)
z = ZIP()
z.loadZIPFile(filename)
data = z.read('Answers.txt')
self.gs = pd.read_csv(BytesIO(data), sep='\t')
# download 4 other filenames from dreamtools synapse project
self._download_data('all_8mers.txt', 'syn4483185')
pb.animate(2)
self._download_data('8mers_gs.txt', 'syn4483187')
pb.animate(3)
self._download_data('probe35_gs.txt', 'syn4483184')
pb.animate(4)
self._download_data('probes35.txt', 'syn4483183')
pb.animate(5)
def unzip(self, filename):
"""Simple method to extract all files contained in an archive"""
from dreamtools.core.ziptools import ZIP
z = ZIP()
z.loadZIPFile(self.get_pathname(filename)), z.extractall(
self.directory)
def test_zip():
z = ZIP()
try:
z.loadZIPFile('p')
except:
pass
