def dGenomeMutAdd(project, mutID, mutfasta):
'''
Check and add a mutant
'''
if not os.path.exists(mutfasta):
logger.error('Fasta file %s may not be present'%(mutfasta))
return False
org = Organism(project)
if not org.isOrg(mutID):
logger.warning('Organism %s is not present yet!'%mutID)
return False
gen = Genome(project)
gen.addProteome(mutID, mutfasta)
logger.info('Mutant %s (%s) added, having %d mutated genes'
%(mutID, org.getOrg(mutID).mkind,gen.howMany(mutID)))
return True
def dGenomeAdd(project, orgID, filename):
'''
Add a single genome
'''
if not os.path.exists(filename):
logger.error('Fasta file %s may not be present'%(filename))
return False
filename = os.path.abspath(filename)
org = Organism(project)
if not org.isOrg(orgID):
logger.warning('Organism %s is not present yet!'%orgID)
return False
gen = Genome(project)
gen.addProteome(orgID, filename)
logger.info('Added genome %s, having %d proteins'%
(orgID, gen.howMany(orgID)))
return True
