def test_var_initialization(self):
'''
This test assumes a well-formed input spec and mostly just
tests that everything compiles and the variable initialization
code does not throw any errors.
'''
print("Setting current project to", self.project)
dxpy.WORKSPACE_ID = self.project
dxpy.PROJECT_CONTEXT_ID = self.project
# Make some data objects for input
dxapplet = dxpy.api.applet_new({"project": dxpy.WORKSPACE_ID,
"name": "anapplet",
"dxapi": "1.0.0",
"runSpec": {"code": "", "interpreter": "bash"}})['id']
dxfile = dxpy.upload_string("foo", name="afile")
dxgtable = dxpy.new_dxgtable(columns=[{"name": "int_col", "type": "int"}], name="agtable")
dxgtable.add_rows([[3], [0]])
dxgtable.close(block=True)
dxrecord = dxpy.new_dxrecord(name="arecord")
dxrecord.close()
dxapp_json = {
"name": "all_vars",
"title": "all_vars",
"summary": "all_vars",
"dxapi": "1.0.0",
"version": "0.0.1",
"categories": [],
"inputSpec": [],
"outputSpec": []
}
classes = ['applet', 'record', 'file', 'gtable',
'boolean', 'int', 'float', 'string', 'hash',
'array:applet', 'array:record', 'array:file', 'array:gtable',
'array:boolean', 'array:int', 'array:float', 'array:string']
for classname in classes:
dxapp_json['inputSpec'].append({"name": "required_" + classname.replace(":", "_"),
"class": classname,
"optional": False})
# Note: marking outputs as optional so that empty arrays
# will be acceptable; keeping names the same (as required)
# in order to allow pass-through from input variables
dxapp_json['outputSpec'].append({"name": "required_" + classname.replace(":", "_"),
"class": classname,
"optional": True})
dxapp_json['inputSpec'].append({"name": "optional_" + classname.replace(":", "_"),
"class": classname,
"optional": True})
cmdline_args = ['-irequired_applet=anapplet',
'-irequired_array_applet=anapplet',
'-irequired_record=arecord',
'-irequired_array_record=arecord',
'-irequired_file=afile',
'-irequired_array_file=afile',
'-irequired_gtable=agtable',
'-irequired_array_gtable=agtable',
'-irequired_boolean=true',
'-irequired_array_boolean=true',
'-irequired_array_boolean=false',
'-irequired_int=32',
'-irequired_array_int=42',
'-irequired_float=3.4',
'-irequired_array_float=.42',
'-irequired_string=foo',
'-irequired_array_string=bar',
'-irequired_hash={"foo":"bar"}']
for lang in supported_languages:
appdir = create_app_dir_with_dxapp_json(dxapp_json, lang)
# Test with bare-minimum of inputs
output = subprocess.check_output(['dx-run-app-locally', appdir] + cmdline_args)
print(output)
# Verify array is printed total 3 times once in each input, logs, and final output
self.assertEquals(len(re.findall("required_array_boolean = \[ true, false ]", output)), 3)
self.assertIn("App finished successfully", output)
# See PTFM-13697 for CentOS 5 details
if testutil.TEST_RUN_JOBS and not testutil.host_is_centos_5():
# Now actually make it an applet and run it
applet_name = dxapp_json['name'] + '-' + lang
subprocess.check_output(['dx', 'build', appdir, '--destination', applet_name])
subprocess.check_output(['dx', 'run', applet_name, '-y', '--wait'] + cmdline_args)
def test_var_initialization(self):
'''
This test assumes a well-formed input spec and mostly just
tests that everything compiles and the variable initialization
code does not throw any errors.
'''
print("Setting current project to", self.project)
dxpy.WORKSPACE_ID = self.project
dxpy.PROJECT_CONTEXT_ID = self.project
# Make some data objects for input
dxpy.api.applet_new({
"project": dxpy.WORKSPACE_ID,
"name": "anapplet",
"dxapi": "1.0.0",
"runSpec": {
"code": "",
"interpreter": "bash",
"distribution": "Ubuntu",
"release": "14.04"
}
})['id']
dxpy.upload_string("foo", name="afile")
dxrecord = dxpy.new_dxrecord(name="arecord")
dxrecord.close()
dxapp_json = {
"name": "all_vars",
"title": "all_vars",
"summary": "all_vars",
"dxapi": "1.0.0",
"version": "0.0.1",
"categories": [],
"inputSpec": [],
"outputSpec": []
}
classes = [
'applet', 'record', 'file', 'boolean', 'int', 'float', 'string',
'hash', 'array:applet', 'array:record', 'array:file',
'array:boolean', 'array:int', 'array:float', 'array:string'
]
for classname in classes:
dxapp_json['inputSpec'].append({
"name":
"required_" + classname.replace(":", "_"),
"class":
classname,
"optional":
False
})
# Note: marking outputs as optional so that empty arrays
# will be acceptable; keeping names the same (as required)
# in order to allow pass-through from input variables
dxapp_json['outputSpec'].append({
"name":
"required_" + classname.replace(":", "_"),
"class":
classname,
"optional":
True
})
dxapp_json['inputSpec'].append({
"name":
"optional_" + classname.replace(":", "_"),
"class":
classname,
"optional":
True
})
cmdline_args = [
'-irequired_applet=anapplet', '-irequired_array_applet=anapplet',
'-irequired_record=arecord', '-irequired_array_record=arecord',
'-irequired_file=afile', '-irequired_array_file=afile',
'-irequired_boolean=true', '-irequired_array_boolean=true',
'-irequired_array_boolean=false', '-irequired_int=32',
'-irequired_array_int=42', '-irequired_float=3.4',
'-irequired_array_float=.42', '-irequired_string=foo',
'-irequired_array_string=bar', '-irequired_hash={"foo":"bar"}'
]
for lang in supported_languages:
appdir = create_app_dir_with_dxapp_json(dxapp_json, lang)
# See PTFM-13697 for CentOS 5 details
if testutil.TEST_RUN_JOBS and not testutil.host_is_centos_5():
# Now actually make it an applet and run it
applet_name = dxapp_json['name'] + '-' + lang
subprocess.check_output(
['dx', 'build', appdir, '--destination', applet_name])
subprocess.check_output(
['dx', 'run', applet_name, '-y', '--wait'] + cmdline_args)