def test_rule_updates_meta_data_with_consent_func(self):
"""Assert updates meta data if source is RegisteredSubject and override fields knocked out."""
site_rule_groups.register(self.test_rule_group_consent_func_cls)
rg = self.test_rule_group_consent_func_cls()
self.assertEqual(CrfMetaData.objects.filter(registered_subject=self.registered_subject, entry__model_name__in=rg.test_rule.target_model_names).count(), 0)
TestVisitFactory(appointment=self.appointment)
self.assertEqual(CrfMetaData.objects.filter(entry_status=NOT_REQUIRED, registered_subject=self.registered_subject, entry__model_name__in=rg.test_rule.target_model_names).count(), 1)
site_rule_groups.unregister(self.test_rule_group_consent_func_cls)
def setUp(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration().prepare()
TestVisitSchedule().build()
class TestRuleGroupConsent(RuleGroup):
test_rule = RequisitionRule(
logic=Logic(
predicate=(('may_store_samples', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testrequisition'],
target_requisition_panels=['research blood draw'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
site_rule_groups.register(TestRuleGroupConsent)
class TestRuleGroupSched(RuleGroup):
test_rule = RequisitionRule(
logic=Logic(
predicate=(('f1', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testrequisition'],
target_requisition_panels=['microtube', 'viral load'])
class Meta:
app_label = 'testing'
source_fk = (TestVisit, 'test_visit')
source_model = TestScheduledModel1
self.study_site = '40'
site_rule_groups.register(TestRuleGroupSched)
self.test_rule_group_sched_cls = TestRuleGroupSched
self.test_visit_factory = TestVisitFactory
self.visit_definition = VisitDefinition.objects.get(code='1000')
self.test_consent = TestConsentWithMixinFactory(
gender='M', study_site=self.study_site, may_store_samples=YES)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.test_consent.subject_identifier)
self.appointment = Appointment.objects.get(
registered_subject=self.registered_subject)
def test_base1(self):
site_rule_groups._registry = {}
class BaseTestRuleGroupSched(RuleGroup):
test_rule = RequisitionRule(
logic=Logic(
predicate=(('f1', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testrequisition'],
target_requisition_panels=['microtube', 'viral load'])
class Meta:
abstract = True
class TestRuleGroupSched1(BaseTestRuleGroupSched):
test_rule2 = RequisitionRule(
logic=Logic(
predicate=(('f2', 'equals', YES)),
consequence='not_required',
alternative='none'),
target_model=['testrequisition'],
target_requisition_panels=['microtube', 'viral load'])
class Meta:
app_label = 'testing'
source_fk = (TestVisit, 'test_visit')
source_model = TestScheduledModel1
site_rule_groups.register(TestRuleGroupSched1)
requisition_panel = RequisitionPanel.objects.get(name='Microtube')
test_visit = self.test_visit_factory(appointment=self.appointment)
self.assertEqual(RequisitionMetaData.objects.filter(entry_status=REQUIRED, registered_subject=self.registered_subject, lab_entry__requisition_panel=requisition_panel).count(), 1)
test_scheduled_model1 = TestScheduledModel1Factory(test_visit=test_visit, f1=NO, f2=NO)
self.assertEqual(RequisitionMetaData.objects.filter(entry_status=NOT_REQUIRED, registered_subject=self.registered_subject, lab_entry__requisition_panel=requisition_panel).count(), 1)
test_scheduled_model1.f1 = YES
test_scheduled_model1.f2 = NO
test_scheduled_model1.save()
self.assertEqual(RequisitionMetaData.objects.filter(entry_status=REQUIRED, registered_subject=self.registered_subject, lab_entry__requisition_panel=requisition_panel).count(), 1)
test_scheduled_model1.f1 = NO
test_scheduled_model1.save()
self.assertEqual(RequisitionMetaData.objects.filter(entry_status=NOT_REQUIRED, registered_subject=self.registered_subject, lab_entry__requisition_panel=requisition_panel).count(), 1)
alternative=NOT_REQUIRED),
target_model=['reproductivehealth'])
srh_utilization = CrfRule(logic=Logic(
predicate=func_show_srh_services_utilization,
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['maternalsrh'])
class Meta:
app_label = 'mb_maternal'
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(MaternalRegisteredSubjectRuleGroup)
class MaternalArvHistoryRuleGroup(RuleGroup):
arv_history_required = CrfRule(logic=Logic(
predicate=(('prior_health_haart', 'equals', YES),
('prev_pregnancy_arv', 'equals', YES, 'or')),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['maternalarvhistory'])
class Meta:
app_label = 'mb_maternal'
source_fk = (MaternalVisit, 'maternal_visit')
source_model = MaternalClinicalHistory
class InfantBirthDataRuleGroup(RuleGroup):
congenital_anomalities_yes = CrfRule(
logic=Logic(predicate=('congenital_anomalities', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['infantcongenitalanomalies'])
class Meta:
app_label = 'mb_infant'
source_fk = (InfantVisit, 'infant_visit')
source_model = InfantBirthData
site_rule_groups.register(InfantBirthDataRuleGroup)
class InfantFuRuleGroup(RuleGroup):
physical_assessment_yes = CrfRule(logic=Logic(
predicate=('physical_assessment', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['infantfuphysical'])
has_dx_yes = CrfRule(logic=Logic(predicate=('has_dx', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['infantfudx'])
def setUp(self):
try:
site_lab_profiles.register(TestLabProfile())
except AlreadyRegisteredLabProfile:
pass
TestAppConfiguration().prepare()
TestVisitSchedule().build()
# a test rule group where the source model is RegisteredSubject
# the rules in this rule group will be only evaluated when the visit instance
# is created or saved. Note source_fk is None.
class TestRuleGroupRs(RuleGroup):
test_rule = CrfRule(
logic=Logic(
predicate=(('gender', 'equals', 'M')),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel1'])
class Meta:
app_label = 'testing'
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(TestRuleGroupRs)
# a test rule group where the source model is a scheduled model.
# a scheduled model has a FK to the visit instance (source_fk).
# the rules in this rule group will be evaluated when the source instance
# is created or saved.
class TestRuleGroupSched(RuleGroup):
test_rule = CrfRule(
logic=Logic(
predicate=(('f1', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel2'])
class Meta:
app_label = 'testing'
source_fk = (TestVisit, 'test_visit')
source_model = TestScheduledModel1
site_rule_groups.register(TestRuleGroupSched)
# a test rule group where the source model is a consent or membership model.
# these models have a FK to registered subject (source_fk).
# the rules in this rule group will only evaluated when the visit instance
# is created or saved.
class TestRuleGroupConsent(RuleGroup):
test_rule = CrfRule(
logic=Logic(
predicate=(('may_store_samples', 'equals', NO)),
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel3'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
site_rule_groups.register(TestRuleGroupConsent)
class TestRuleGroupConsentFunc(RuleGroup):
test_rule = CrfRule(
logic=Logic(
predicate=func_condition_true,
consequence='not_required',
alternative='new'),
target_model=['testscheduledmodel3'])
class Meta:
app_label = 'testing'
source_fk = (RegisteredSubject, 'registered_subject')
source_model = TestConsentWithMixin
self.test_rule_group_rs_cls = TestRuleGroupRs
self.test_rule_group_sched_cls = TestRuleGroupSched
self.test_rule_group_consent_cls = TestRuleGroupConsent
self.test_rule_group_consent_func_cls = TestRuleGroupConsentFunc
self.visit_definition = VisitDefinition.objects.get(code='1000')
self.test_consent = TestConsentWithMixinFactory(
gender='M',
study_site='40',
may_store_samples=NO)
self.registered_subject = RegisteredSubject.objects.get(subject_identifier=self.test_consent.subject_identifier)
self.appointment = Appointment.objects.get(registered_subject=self.registered_subject)
logic=Logic(predicate=func_show_srh_forms, consequence=UNKEYED, alternative=NOT_REQUIRED),
target_model=["reproductivehealth"],
)
srh_utilization = CrfRule(
logic=Logic(predicate=func_show_srh_services_utilization, consequence=UNKEYED, alternative=NOT_REQUIRED),
target_model=["maternalsrh"],
)
class Meta:
app_label = "mb_maternal"
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(MaternalRegisteredSubjectRuleGroup)
class MaternalArvHistoryRuleGroup(RuleGroup):
arv_history_required = CrfRule(
logic=Logic(
predicate=(("prior_health_haart", "equals", YES), ("prev_pregnancy_arv", "equals", YES, "or")),
consequence=UNKEYED,
alternative=NOT_REQUIRED,
),
target_model=["maternalarvhistory"],
)
class Meta:
app_label = "mb_maternal"
target_model=[('td_maternal', 'maternalultrasoundinitial')])
srh_services = CrfRule(
logic=Logic(
predicate=func_show_srh_services_utilization,
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=[('td_maternal', 'maternalsrh')])
class Meta:
app_label = 'td_maternal'
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(MaternalRegisteredSubjectRuleGroup)
class MaternalRequisitionRuleGroup(RuleGroup):
require_vl_prn = RequisitionRule(
logic=Logic(
predicate=func_mother_pos_vl,
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=[('td_lab', 'maternalrequisition')],
target_requisition_panels=['Viral Load'])
require_pbmc_vl = RequisitionRule(
logic=Logic(
predicate=require_pbmc_vl,
class InfantBirthDataRuleGroup(RuleGroup):
congenital_anomalities_yes = CrfRule(
logic=Logic(
predicate=('congenital_anomalities', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['infantcongenitalanomalies'])
class Meta:
app_label = 'mb_infant'
source_fk = (InfantVisit, 'infant_visit')
source_model = InfantBirthData
site_rule_groups.register(InfantBirthDataRuleGroup)
class InfantFuRuleGroup(RuleGroup):
physical_assessment_yes = CrfRule(
logic=Logic(
predicate=('physical_assessment', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=['infantfuphysical'])
has_dx_yes = CrfRule(
logic=Logic(
predicate=('has_dx', 'equals', YES),
consequence=UNKEYED,
target_model=[('td_infant', 'infantnvpdispensing'), ])
nvp_adjustment = CrfRule(
logic=Logic(
predicate=func_show_nvp_adjustment_2010,
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=[('td_infant', 'infantnvpadjustment'), ])
class Meta:
app_label = 'td_infant'
source_fk = None
source_model = RegisteredSubject
site_rule_groups.register(InfantRegisteredSubjectRuleGroup)
class InfantFuRuleGroup(RuleGroup):
physical_assessment_yes = CrfRule(
logic=Logic(
predicate=('physical_assessment', 'equals', YES),
consequence=UNKEYED,
alternative=NOT_REQUIRED),
target_model=[('td_infant', 'infantfuphysical'), ])
has_dx_yes = CrfRule(
logic=Logic(
predicate=('has_dx', 'equals', YES),
consequence=UNKEYED,
