def get_sky_spectrum(mag=None, mag_band='g', mag_system='AB'):
sky_spec = spectrum.MaunakeaSkySpectrum()
if mag is None:
return sky_spec
broadband = efficiency.FilterResponse(band=mag_band)
sky_spec.rescale_magnitude(mag, band=broadband, system=mag_system)
return sky_spec
def main():
# Assume slit is perfectly aligned with center of object
# TODO: Introduce wavelength dependent seeing?
mag = 22. # g-band magnitude
seeing = 0.6 # arcsec
slitwidth = 0.75 # arcsec
slitlength = 5. # arcsec
slitrotation = 0. # degrees
# Define the slit aperture
slit = aperture.SlitAperture(0.,
0.,
slitwidth,
slitlength,
rotation=slitrotation)
# Sample the source at least 5 times per seeing disk FWHM
sampling = seeing / 5
# Set the size of the map to be the maximum of 3 seeing disks, or
# 1.5 times the size of the slit in the cartesian coordinates.
# First, find the width of the slit shape in x and y (including any
# rotation).
dslitx, dslity = numpy.diff(numpy.asarray(slit.bounds).reshape(2, -1),
axis=0).ravel()
size = max(seeing * 3, 1.5 * dslitx, 1.5 * dslity)
# Use a point source with unity integral (integral of mapped
# profile will not necessarily be unity)
star = source.OnSkySource(seeing, 1.0, sampling=sampling, size=size)
print('Fraction of star flux in mapped image: {0:.3f}'.format(
numpy.sum(star.data) * numpy.square(sampling)))
slit_img = slit.response(star.x, star.y)
print('Slit area: {0:.2f} (arcsec^2)'.format(slit.area))
print('Aperture efficiency: {0:.2f}'.format(
numpy.sum(slit_img * star.data) * numpy.square(sampling)))
# Use a reference spectrum that's constant; units are 1e-17 erg/s/cm^2/angstrom
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
# Rescale to a specified magnitude
spec.rescale_magnitude(mag, band=g)
print('Star Magnitude (AB mag): {0:.2f}'.format(spec.magnitude(g)))
# Sky Spectrum; units are 1e-17 erg/s/cm^2/angstrom/arcsec^2
sky = spectrum.MaunakeaSkySpectrum()
sky_mag = sky.magnitude(g)
print('Sky Surface Brightness (AB mag/arcsec^2): {0:.2f}'.format(sky_mag))
def test_mag():
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
print(spec.magnitude(g))
spec.rescale_magnitude(10, band=g)
print(spec.magnitude(g))
# pyplot.plot(spec.wave, spec.flux)
# pyplot.plot(spec.wave, spec.flux)
# pyplot.yscale('log')
# pyplot.show()
pyplot.plot(spec.wave, spec.photon_flux())
pyplot.show()
print(spec.photon_flux(band=g))
def get_spectrum(wave, mag, emline_db=None, redshift=0.0, resolution=3500):
"""
"""
spec = spectrum.ABReferenceSpectrum(wave, resolution=resolution, log=True)
g = efficiency.FilterResponse()
spec.rescale_magnitude(mag, band=g)
if emline_db is None:
return spec
spec = spectrum.EmissionLineSpectrum(wave,
emline_db['flux'],
emline_db['restwave'],
emline_db['fwhm'],
units=emline_db['fwhmu'],
redshift=redshift,
resolution=resolution,
log=True,
continuum=spec.flux)
warnings.warn(
'Including emission lines, spectrum g-band magnitude changed '
'from {0} to {1}.'.format(mag, spec.magnitude(band=g)))
return spec
def get_spectrum(wave,
mag,
mag_band='g',
mag_system='AB',
spec_file=None,
spec_wave=None,
spec_wave_units=None,
spec_flux=None,
spec_flux_units=None,
spec_res_indx=None,
spec_res_value=None,
spec_table=None,
emline_db=None,
redshift=0.0,
resolution=3500):
"""
"""
spec = spectrum.ABReferenceSpectrum(wave, resolution=resolution, log=True) \
if spec_file is None \
else read_spectrum(spec_file, spec_wave, spec_wave_units, spec_flux,
spec_flux_units, spec_res_indx, spec_res_value, spec_table,
wave, resolution)
broadband = efficiency.FilterResponse(band=mag_band)
spec.rescale_magnitude(mag, band=broadband, system=mag_system)
if emline_db is None:
return spec
spec = spectrum.EmissionLineSpectrum(wave,
emline_db['flux'],
emline_db['restwave'],
emline_db['fwhm'],
units=emline_db['fwhmu'],
redshift=redshift,
resolution=resolution,
log=True,
continuum=spec.flux)
warnings.warn(
'Including emission lines, spectrum broadband magnitude changed '
'from {0} to {1}.'.format(mag, spec.magnitude(band=broadband)))
return spec
def twod_spec():
mag = 23. # g-band AB magnitude
seeing = 0.6 # arcsec
wave_ref = 5500 # Reference wavelength in angstrom
slitwidth = 0.75 # arcsec
slitlength = 5. # arcsec
slitrotation = 0. # degrees
# wave = numpy.linspace(3100., 10000., num=6901, dtype=float)
# star_spec = spectrum.ABReferenceSpectrum(wave)
star_spec = spectrum.BlueGalaxySpectrum()
star_spec.show()
g = efficiency.FilterResponse()
star_spec.rescale_magnitude(mag, band=g)
sky_spec = spectrum.MaunakeaSkySpectrum()
psf = source.OnSkyGaussian(seeing)
star_reference_flux = star_spec.interp([wave_ref])[0]
star = source.OnSkySource(psf, star_reference_flux)
sky_reference_flux = sky_spec.interp([wave_ref])[0]
sky = source.OnSkySource(psf, source.OnSkyConstant(sky_reference_flux))
slit = aperture.SlitAperture(0.,
0.,
slitwidth,
slitlength,
rotation=slitrotation)
lowres_wfos = spectrographs.TMTWFOS(setting='lowres')
wave_lim = star_spec.wave[[0, -1]]
arm = 'red'
print('Building off-slit rectilinear spectrum')
off_slit_spectrum = lowres_wfos.twod_spectrum(sky_spec,
slit,
wave_lim=wave_lim,
arm=arm,
rectilinear=True)
# print(numpy.median(off_slit_spectrum))
# pyplot.imshow(off_slit_spectrum, origin='lower', interpolation='nearest', aspect='auto',
# vmax=10)
# pyplot.show()
print('Building on-slit rectilinear spectrum')
on_slit_spectrum = lowres_wfos.twod_spectrum(sky_spec,
slit,
source_distribution=star,
source_spectrum=star_spec,
wave_lim=wave_lim,
arm=arm,
rectilinear=True)
# pyplot.imshow(on_slit_spectrum, origin='lower', interpolation='nearest', aspect='auto',
# vmax=10)
# pyplot.show()
print('Writing rectilinear spectra to disk.')
fits.HDUList([fits.PrimaryHDU(data=off_slit_spectrum)
]).writeto('offslit_test.fits', overwrite=True)
fits.HDUList([fits.PrimaryHDU(data=on_slit_spectrum)
]).writeto('onslit_test.fits', overwrite=True)
# Field coordinates in arcsec
field_coo = numpy.array([-4., 1.2]) * 60.
print('Building off-slit projected spectrum.')
off_slit_projected_spectrum, spec0, spat0 \
= lowres_wfos.twod_spectrum(sky_spec, slit, wave_lim=wave_lim, arm=arm,
field_coo=field_coo)
# from IPython import embed
# embed()
print('Building on-slit projected spectrum.')
on_slit_projected_spectrum, spec0, spat0 \
= lowres_wfos.twod_spectrum(sky_spec, slit, source_distribution=star,
source_spectrum=star_spec, wave_lim=wave_lim, arm=arm,
field_coo=field_coo)
# embed()
print(on_slit_projected_spectrum.shape)
fits.HDUList([fits.PrimaryHDU(data=off_slit_projected_spectrum)
]).writeto('offslit_projected_test.fits', overwrite=True)
fits.HDUList([fits.PrimaryHDU(data=on_slit_projected_spectrum)
]).writeto('onslit_projected_test.fits', overwrite=True)
def gal_set_image():
seeing = 0.6 # arcsec
wave_ref = 5500 # Reference wavelength in angstrom
slitwidth = 0.75 # arcsec
slitlength = 5. # arcsec
slitrotation = 0. # degrees
slit_pos_file = 'slits.db'
if not os.path.isfile(slit_pos_file):
slit_x = numpy.arange(-4.2 * 60 + slitlength, 4.2 * 60,
slitlength + slitlength * 0.2)
nslits = slit_x.size
slit_y = numpy.random.uniform(size=nslits) * 3 - 1.5
mag = 23 - numpy.random.uniform(size=nslits) * 2
z = 0.1 + numpy.random.uniform(size=nslits) * 0.4
numpy.savetxt(slit_pos_file,
numpy.array([slit_x, slit_y, mag, z]).T,
header='{0:>7} {1:>7} {2:>5} {3:>7}'.format(
'SLITX', 'SLITY', 'GMAG', 'Z'),
fmt=['%9.2f', '%7.2f', '%5.2f', '%7.5f'])
else:
slit_x, slit_y, mag, z = numpy.genfromtxt(slit_pos_file).T
nslits = slit_x.size
nspec = 18000
nspat = 10800
image = {
'blue': numpy.zeros((nspec, nspat), dtype=numpy.float32),
'red': numpy.zeros((nspec, nspat), dtype=numpy.float32)
}
psf = source.OnSkyGaussian(seeing)
g = efficiency.FilterResponse()
sky_spec = spectrum.MaunakeaSkySpectrum()
sky_reference_flux = sky_spec.interp([wave_ref])[0]
sky = source.OnSkyConstant(sky_reference_flux)
slit = aperture.SlitAperture(0.,
0.,
slitwidth,
slitlength,
rotation=slitrotation)
lowres_wfos = spectrographs.TMTWFOS(setting='lowres')
wave_lim = numpy.array([3100, 10000])
gal = source.OnSkySource(psf,
source.OnSkySersic(1.0,
0.1,
1,
unity_integral=True),
sampling=lowres_wfos.arms['blue'].pixelscale)
# pyplot.imshow(gal.data, origin='lower', interpolation='nearest')
# pyplot.show()
for i in range(nslits):
gal_spec = spectrum.BlueGalaxySpectrum()
gal_spec.redshift(z[i])
gal_spec.rescale_magnitude(mag[i], band=g)
field_coo = numpy.array([slit_x[i], slit_y[i]])
for arm in ['blue', 'red']:
print('Building on-slit projected spectrum.')
slit_spectrum, spec0, spat0 \
= lowres_wfos.twod_spectrum(sky_spec, slit, source_distribution=gal,
source_spectrum=gal_spec, wave_lim=wave_lim,
arm=arm, field_coo=field_coo)
sspec = int(spec0) + nspec // 2
sspat = int(spat0) + nspat // 2
image[arm][sspec:sspec+slit_spectrum.shape[0], sspat:sspat+slit_spectrum.shape[1]] \
+= slit_spectrum
fits.HDUList([fits.PrimaryHDU(data=image['blue'])
]).writeto('gal_set_blue.fits', overwrite=True)
fits.HDUList([fits.PrimaryHDU(data=image['red'])
]).writeto('gal_set_red.fits', overwrite=True)
def spec_eff_plot(plot_file=None):
mag = 19.
airmass = 2.
dmag_sky = -3.
# Spectra; units are 1e-17 erg/s/cm^2/angstrom/arcsec^2
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
spec.rescale_magnitude(mag, band=g)
sky = spectrum.MaunakeaSkySpectrum()
sky_mag = sky.magnitude(g)
if dmag_sky is not None:
sky_mag += dmag_sky
sky.rescale_magnitude(sky_mag, band=g)
# Efficiencies
atm = efficiency.AtmosphericThroughput(airmass=airmass)
fiber_throughput = efficiency.FiberThroughput()
qe_file = os.path.join(os.environ['ENYO_DIR'], 'data', 'efficiency',
'detectors', 'thor_labs_monochrome_qe.db')
fiddles_qe = efficiency.Efficiency.from_file(qe_file, wave_units='nm')
xlim = [3700, 5600]
font = {'size': 10}
rc('font', **font)
w, h = pyplot.figaspect(1)
fig = pyplot.figure(figsize=(1.5 * w, 1.5 * h))
ax = fig.add_axes([0.1, 0.5, 0.85, 0.2])
ax.minorticks_on()
ax.tick_params(which='major',
length=6,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=3,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.9', zorder=0, linestyle='-')
ax.xaxis.set_major_formatter(ticker.NullFormatter())
ax.set_xlim(xlim)
ax.set_ylim([3, 35])
ax.plot(spec.wave, spec.flux, color='k', zorder=3)
ax.plot(sky.wave, sky.flux, color='C3', zorder=3, lw=0.8)
ax.text(-0.08,
0.5,
r'$F_\lambda$ (erg/s/cm$^2$/${\rm \AA}$)',
ha='center',
va='center',
rotation='vertical',
transform=ax.transAxes)
ax.text(-0.05,
0.5,
r'$\mathcal{I}_\lambda$ (erg/s/cm$^2$/${\rm \AA}$/")',
ha='center',
va='center',
rotation='vertical',
transform=ax.transAxes,
color='C3')
ax.text(0.05,
0.55,
'Source',
ha='left',
va='center',
transform=ax.transAxes)
ax.text(0.2,
0.1,
'Sky',
color='C3',
ha='left',
va='center',
transform=ax.transAxes)
ax = fig.add_axes([0.1, 0.3, 0.85, 0.2])
ax.minorticks_on()
ax.tick_params(which='major',
length=6,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=3,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.9', zorder=0, linestyle='-')
ax.set_xlim(xlim)
ax.set_ylim([0, 1.1])
ax.plot(atm.wave, atm.eta, color='C3', zorder=3)
ax.plot(fiber_throughput.wave, fiber_throughput.eta, color='C0', zorder=3)
ax.plot(fiddles_qe.wave, fiddles_qe.eta, color='C1', zorder=3)
ax.plot(g.wave, g.eta, color='k', zorder=3)
ax.text(0.5,
-0.2,
r'Wavelength (${\rm \AA}$)',
ha='center',
va='center',
transform=ax.transAxes)
ax.text(-0.08,
0.5,
r'$\eta$',
ha='center',
va='center',
rotation='vertical',
transform=ax.transAxes)
ax.text(0.01,
0.87,
'Fiber',
color='C0',
ha='left',
va='center',
transform=ax.transAxes)
ax.text(0.01,
0.57,
'Sky',
color='C3',
ha='left',
va='center',
transform=ax.transAxes)
ax.text(0.01,
0.4,
'Detector',
color='C1',
ha='left',
va='center',
transform=ax.transAxes)
ax.text(0.01,
0.1,
r'$g$ Filter',
color='k',
ha='left',
va='center',
transform=ax.transAxes)
if plot_file is None:
pyplot.show()
else:
fig.canvas.print_figure(plot_file, bbox_inches='tight')
fig.clear()
pyplot.close(fig)
def fiddles_model(mag,
telescope,
seeing,
exposure_time,
airmass=1.0,
fiddles_fratio=3.,
fiber_diameter=0.15,
dmag_sky=None):
# Use a reference spectrum that's constant; units are 1e-17 erg/s/cm^2/angstrom
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
# Rescale to a specified magnitude
spec.rescale_magnitude(mag, band=g)
print('Star Magnitude (AB mag): {0:.2f}'.format(spec.magnitude(g)))
# Sky Spectrum; units are 1e-17 erg/s/cm^2/angstrom/arcsec^2
sky = spectrum.MaunakeaSkySpectrum()
sky_mag = sky.magnitude(g)
print('Sky Surface Brightness (AB mag/arcsec^2): {0:.2f}'.format(sky_mag))
if dmag_sky is not None:
sky_mag += dmag_sky
sky.rescale_magnitude(sky_mag, band=g)
# Fiddles detector
fiddles_pixel_size = 7.4e-3 # mm
fiddles_fullwell = 18133 # Electrons (NOT ADU!)
fiddles_platescale = telescope.platescale * fiddles_fratio / telescope.fratio
qe_file = os.path.join(os.environ['ENYO_DIR'], 'data', 'efficiency',
'detectors', 'thor_labs_monochrome_qe.db')
fiddles_det = efficiency.Detector(
pixelscale=fiddles_pixel_size / fiddles_platescale,
rn=6.45,
dark=5.,
qe=efficiency.Efficiency.from_file(qe_file, wave_units='nm'))
print('FIDDLES pixelscale (arcsec/pixel): {0:.3f}'.format(
fiddles_det.pixelscale))
# On-sky fiber diameter
on_sky_fiber_diameter = fiber_diameter / fiddles_platescale # arcsec
print('On-sky fiber diameter (arcsec): {0:.2f}'.format(
on_sky_fiber_diameter))
# Size for the fiber image
upsample = 1 if fiddles_det.pixelscale < seeing / 5 else int(
fiddles_det.pixelscale / (seeing / 5)) + 1
print('Upsampling: {0}'.format(upsample))
sampling = fiddles_det.pixelscale / upsample
print('Pixel sampling of maps: {0:.3f} (arcsec/pixel)'.format(sampling))
size = (int(numpy.ceil(on_sky_fiber_diameter * 1.2 / sampling)) // upsample
+ 1) * upsample * sampling
print('Square map size : {0:.3f} (arcsec)'.format(size))
# Use a point source with unity integral (integral of mapped
# profile will not necessarily be unity)
star = source.OnSkySource(seeing, 1.0, sampling=sampling, size=size)
print('Fraction of star flux in mapped image: {0:.3f}'.format(
numpy.sum(star.data) * numpy.square(sampling)))
# pyplot.imshow(star.data, origin='lower', interpolation='nearest')
# pyplot.show()
# Define fiber aperture
fiber = aperture.FiberAperture(0.,
0.,
on_sky_fiber_diameter,
resolution=100)
# Generate its response function
fiber_response = fiber.response(star.x, star.y)
print('Fiber area (mapped): {0:.2f} (arcsec^2)'.format(
numpy.sum(fiber_response) * numpy.square(star.sampling)))
print('Fiber area (nominal): {0:.2f} (arcsec^2)'.format(fiber.area))
in_fiber = numpy.sum(star.data * fiber_response) * numpy.square(
star.sampling)
print('Aperture loss: {0:.3f}'.format(in_fiber))
# This would assume that the fiber does NOT scramble the light...
# fiber_img = star.data*fiber_response
# Instead scale the fiber response profile to produce a uniformly
# scrambled fiber output beam
scale = numpy.sum(star.data * fiber_response) / numpy.sum(fiber_response)
source_fiber_img = scale * fiber_response
# Down-sample to the detector size
if upsample > 1:
source_fiber_img = util.boxcar_average(source_fiber_img, upscale)
fiber_response = util.boxcar_average(fiber_response, upscale)
# Scale the spectra to be erg/angstrom (per arcsec^2 for sky)
print('Exposure time: {0:.1f} (s)'.format(exposure_time))
spec.rescale(telescope.area * exposure_time)
sky.rescale(telescope.area * exposure_time)
# Convert them to photons/angstrom (per arcsec^2 for sky)
spec.photon_flux()
sky.photon_flux()
# Atmospheric Extinction
atm = efficiency.AtmosphericThroughput(airmass=airmass)
# Fiber throughput (10-m polymicro fiber run)
fiber_throughput = efficiency.FiberThroughput()
# TODO: assumes no fiber FRD or coupling losses
# Integrate spectrally to get the total number of electrons at the
# detector accounting for the g-band filter and the detector qe.
flux = numpy.sum(spec.flux * atm(spec.wave) * fiber_throughput(spec.wave) *
g(spec.wave) * fiddles_det.qe(spec.wave) *
spec.wavelength_step())
print('Object flux: {0:.3f} (electrons)'.format(flux))
sky_flux = numpy.sum(sky.flux * fiber_throughput(sky.wave) * g(sky.wave) *
fiddles_det.qe(sky.wave) * sky.wavelength_step())
print('Sky flux: {0:.3f} (electrons/arcsec^2)'.format(sky_flux))
print('Sky flux: {0:.3f} (electrons)'.format(sky_flux * fiber.area))
# Scale the source image by the expected flux (source_fiber_img was
# constructed assuming unity flux)
fiber_obj_img = source_fiber_img * flux
# Scale the fiber response function by the sky surface brightness
# (the integral of the sky image is then just the fiber area times
# the uniform sky surface brightness)
fiber_sky_img = fiber_response * sky_flux
# Integrate spatially over the pixel size to get the number of
# electrons in each pixel
fiber_obj_img *= numpy.square(upsample * sampling)
fiber_sky_img *= numpy.square(upsample * sampling)
return fiber_obj_img, fiber_sky_img, fiddles_det, sky_mag
def fiddles_snr_plot(seeing,
exptime,
airmass,
dmag_sky,
data_file,
plot_file=None):
db = numpy.genfromtxt(data_file)
mag = db[:, 0]
apf_snr_pix = db[:, 1]
apf_snr = db[:, 2]
apf_saturated = db[:, 3].astype(bool)
keck_snr_pix = db[:, 4]
keck_snr = db[:, 5]
keck_saturated = db[:, 6].astype(bool)
# TODO: Read this from the file header
g = efficiency.FilterResponse()
sky = spectrum.MaunakeaSkySpectrum()
sky_mag = sky.magnitude(g)
if dmag_sky is not None:
sky_mag += dmag_sky
# best_apf_mag = interpolate.interp1d(apf_snr_pix, mag)(10.)
# print(best_apf_mag)
# best_keck_mag = interpolate.interp1d(keck_snr_pix, mag)(10.)
# print(best_keck_mag)
font = {'size': 16}
rc('font', **font)
w, h = pyplot.figaspect(1)
fig = pyplot.figure(figsize=(1.5 * w, 1.5 * h))
ax = fig.add_axes([0.15, 0.15, 0.69, 0.69], facecolor='0.98')
ax.minorticks_on()
ax.tick_params(which='major', length=6, direction='in')
ax.tick_params(which='minor', length=3, direction='in')
ax.grid(True, which='major', color='0.9', zorder=0, linestyle='-')
ax.plot(mag[numpy.invert(apf_saturated)],
apf_snr_pix[numpy.invert(apf_saturated)],
color='C0',
zorder=2,
lw=0.5)
ax.scatter(mag[numpy.invert(apf_saturated)],
apf_snr_pix[numpy.invert(apf_saturated)],
marker='.',
lw=0,
color='C0',
s=100,
zorder=2)
if numpy.any(apf_saturated):
ax.scatter(mag[apf_saturated],
apf_snr_pix[apf_saturated],
marker='x',
lw=1,
color='C3',
s=50,
zorder=2)
ax.plot(mag[numpy.invert(keck_saturated)],
keck_snr_pix[numpy.invert(keck_saturated)],
color='C2',
zorder=2,
lw=0.5)
ax.scatter(mag[numpy.invert(keck_saturated)],
keck_snr_pix[numpy.invert(keck_saturated)],
marker='.',
lw=0,
color='C2',
s=100,
zorder=2)
if numpy.any(keck_saturated):
ax.scatter(mag[keck_saturated],
keck_snr_pix[keck_saturated],
marker='x',
lw=1,
color='C3',
s=50,
zorder=2)
ax.axhline(10., color='k', linestyle='--')
ax.set_ylim([0.01, 300])
ax.set_yscale('log')
logformatter = ticker.FuncFormatter(lambda y, pos: ('{{:.{:1d}f}}'.format(
int(numpy.maximum(-numpy.log10(y), 0)))).format(y))
ax.yaxis.set_major_formatter(logformatter)
ax.text(-0.13,
0.5,
r'S/N (pixel$^{-1}$)',
ha='center',
va='center',
rotation='vertical',
transform=ax.transAxes)
ax.text(0.5,
-0.1,
r'$m_g$ (AB Mag)',
ha='center',
va='center',
transform=ax.transAxes)
ax.text(0.05,
0.35,
'APF',
ha='left',
va='center',
transform=ax.transAxes,
color='C0')
ax.text(0.05,
0.30,
'Keck',
ha='left',
va='center',
transform=ax.transAxes,
color='C2')
ax.text(0.05,
0.25,
'Saturated',
ha='left',
va='center',
transform=ax.transAxes,
color='C3')
ax.text(0.05,
0.20,
r'Sky $\mu_g$ = {0:.2f} AB mag / arcsec$^2$'.format(sky_mag),
ha='left',
va='center',
transform=ax.transAxes,
color='k')
ax.text(0.05,
0.15,
'ExpTime = {0} s'.format(exptime),
ha='left',
va='center',
transform=ax.transAxes,
color='k')
ax.text(0.05,
0.05,
'Seeing = {0} arcsec FWHM'.format(seeing),
ha='left',
va='center',
transform=ax.transAxes,
color='k')
ax.text(0.05,
0.10,
'Airmass = {0}'.format(airmass),
ha='left',
va='center',
transform=ax.transAxes,
color='k')
if plot_file is None:
pyplot.show()
else:
fig.canvas.print_figure(plot_file, bbox_inches='tight')
fig.clear()
pyplot.close(fig)
if __name__ == '__main__':
spec_eff_plot('fiddles_etc_elements.pdf')
plot_file = os.path.join(os.environ['ENYO_DIR'],
'fiddles_etc_realization.pdf')
fiddles_realization_plot(plot_file=plot_file)
main(False)
exit()
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
# print('Magnitude: {0:.2f}'.format(spec.magnitude(g)))
spec.rescale_magnitude(22.0, band=g)
print('Magnitude: {0:.2f}'.format(spec.magnitude(g)))
# Sky Spectrum; units are 1e-17 erg/s/cm^2/angstrom/arcsec^2
sky = spectrum.MaunakeaSkySpectrum()
print('Sky Magnitude: {0:.2f}'.format(sky.magnitude(g)))
pyplot.plot(sky.wave, sky.flux)
pyplot.plot(spec.wave, spec.flux)
pyplot.plot(g.wave, g.eta)
pyplot.show()
#test_mag()
def main(args):
t = time.perf_counter()
# Constants:
resolution = 3500. # lambda/dlambda
fiber_diameter = 0.8 # Arcsec
rn = 2. # Detector readnoise (e-)
dark = 0.0 # Detector dark-current (e-/s)
# Temporary numbers that assume a given spectrograph PSF and LSF.
# Assume 3 pixels per spectral and spatial FWHM.
spatial_fwhm = 3.0
spectral_fwhm = 3.0
mags = numpy.arange(args.mag[0], args.mag[1] + args.mag[2], args.mag[2])
times = numpy.arange(args.time[0], args.time[1] + args.time[2],
args.time[2])
# Get source spectrum in 1e-17 erg/s/cm^2/angstrom. Currently, the
# source spectrum is assumed to be
# - normalized by the total integral of the source flux
# - independent of position within the source
wave = get_wavelength_vector(args.wavelengths[0], args.wavelengths[1],
args.wavelengths[2])
spec = get_spectrum(wave, mags[0], resolution=resolution)
# Get the source distribution. If the source is uniform, onsky is None.
onsky = None
# Get the sky spectrum
sky_spectrum = spectrum.MaunakeaSkySpectrum()
# Overplot the source and sky spectrum
# ax = spec.plot()
# ax = sky_spectrum.plot(ax=ax, show=True)
# Get the atmospheric throughput
atmospheric_throughput = efficiency.AtmosphericThroughput(
airmass=args.airmass)
# Set the telescope. Defines the aperture area and throughput
# (nominally 3 aluminum reflections for Keck)
telescope = telescopes.KeckTelescope()
# Define the observing aperture; fiber diameter is in arcseconds,
# center is 0,0 to put the fiber on the target center. "resolution"
# sets the resolution of the fiber rendering; it has nothing to do
# with spatial or spectral resolution of the instrument
fiber = aperture.FiberAperture(0, 0, fiber_diameter, resolution=100)
# Get the spectrograph throughput (circa June 2018; TODO: needs to
# be updated). Includes fibers + foreoptics + FRD + spectrograph +
# detector QE (not sure about ADC). Because this is the total
# throughput, define a generic efficiency object.
thru_db = numpy.genfromtxt(
os.path.join(os.environ['ENYO_DIR'], 'data/efficiency',
'fobos_throughput.db'))
spectrograph_throughput = efficiency.Efficiency(thru_db[:, 1],
wave=thru_db[:, 0])
# System efficiency combines the spectrograph and the telescope
system_throughput = efficiency.SystemThroughput(
wave=spec.wave,
spectrograph=spectrograph_throughput,
telescope=telescope.throughput)
# Instantiate the detector; really just a container for the rn and
# dark current for now. QE is included in fobos_throughput.db file,
# so I set it to 1 here.
det = detector.Detector(rn=rn, dark=dark, qe=1.0)
# Extraction: makes simple assumptions about the detector PSF for
# each fiber spectrum and mimics a "perfect" extraction, including
# an assumption of no cross-talk between fibers. Ignore the
# "spectral extraction".
extraction = extract.Extraction(det,
spatial_fwhm=spatial_fwhm,
spatial_width=1.5 * spatial_fwhm,
spectral_fwhm=spectral_fwhm,
spectral_width=spectral_fwhm)
snr_label = 'S/N per {0}'.format('R element' if args.snr_units ==
'resolution' else args.snr_units)
# SNR
g = efficiency.FilterResponse()
r = efficiency.FilterResponse(band='r')
snr_g = numpy.empty((mags.size, times.size), dtype=float)
snr_r = numpy.empty((mags.size, times.size), dtype=float)
for i in range(mags.size):
spec.rescale_magnitude(mags[i], band=g)
for j in range(times.size):
print('{0}/{1} ; {2}/{3}'.format(i + 1, mags.size, j + 1,
times.size),
end='\r')
# Perform the observation
obs = Observation(telescope,
sky_spectrum,
fiber,
times[j],
det,
system_throughput=system_throughput,
atmospheric_throughput=atmospheric_throughput,
airmass=args.airmass,
onsky_source_distribution=onsky,
source_spectrum=spec,
extraction=extraction,
snr_units=args.snr_units)
# Construct the S/N spectrum
snr_spec = obs.snr(sky_sub=True)
snr_g[i,
j] = numpy.sum(g(snr_spec.wave) * snr_spec.flux) / numpy.sum(
g(snr_spec.wave))
snr_r[i,
j] = numpy.sum(r(snr_spec.wave) * snr_spec.flux) / numpy.sum(
r(snr_spec.wave))
print('{0}/{1} ; {2}/{3}'.format(i + 1, mags.size, j + 1, times.size))
extent = [
args.time[0] - args.time[2] / 2, args.time[1] + args.time[2] / 2,
args.mag[0] - args.mag[2] / 2, args.mag[1] + args.mag[2] / 2
]
w, h = pyplot.figaspect(1)
fig = pyplot.figure(figsize=(1.5 * w, 1.5 * h))
ax = fig.add_axes([0.15, 0.2, 0.7, 0.7])
img = ax.imshow(snr_g,
origin='lower',
interpolation='nearest',
extent=extent,
aspect='auto',
norm=colors.LogNorm(vmin=snr_g.min(), vmax=snr_g.max()))
cax = fig.add_axes([0.86, 0.2, 0.02, 0.7])
pyplot.colorbar(img, cax=cax)
cax.text(4,
0.5,
snr_label,
ha='center',
va='center',
transform=cax.transAxes,
rotation='vertical')
ax.text(0.5,
-0.08,
'Exposure Time [s]',
ha='center',
va='center',
transform=ax.transAxes)
ax.text(-0.12,
0.5,
r'Surface Brightness [AB mag/arcsec$^2$]',
ha='center',
va='center',
transform=ax.transAxes,
rotation='vertical')
ax.text(0.5,
1.03,
r'$g$-band S/N',
ha='center',
va='center',
transform=ax.transAxes,
fontsize=12)
pyplot.show()
def main(args):
if args.sky_err < 0 or args.sky_err > 1:
raise ValueError(
'--sky_err option must provide a value between 0 and 1.')
t = time.perf_counter()
# Constants:
resolution = 3500. # lambda/dlambda
fiber_diameter = 0.8 # Arcsec
rn = 2. # Detector readnoise (e-)
dark = 0.0 # Detector dark-current (e-/s)
# Temporary numbers that assume a given spectrograph PSF and LSF.
# Assume 3 pixels per spectral and spatial FWHM.
spatial_fwhm = args.spot_fwhm
spectral_fwhm = args.spot_fwhm
# Get source spectrum in 1e-17 erg/s/cm^2/angstrom. Currently, the
# source spectrum is assumed to be
# - normalized by the total integral of the source flux
# - independent of position within the source
dw = 1 / spectral_fwhm / resolution / numpy.log(10)
wavelengths = [3100, 10000, dw]
wave = get_wavelength_vector(wavelengths[0], wavelengths[1],
wavelengths[2])
emline_db = None if args.emline is None else read_emission_line_database(
args.emline)
spec = get_spectrum(wave,
args.mag,
mag_band=args.mag_band,
mag_system=args.mag_system,
spec_file=args.spec_file,
spec_wave=args.spec_wave,
spec_wave_units=args.spec_wave_units,
spec_flux=args.spec_flux,
spec_flux_units=args.spec_flux_units,
spec_res_indx=args.spec_res_indx,
spec_res_value=args.spec_res_value,
spec_table=args.spec_table,
emline_db=emline_db,
redshift=args.redshift,
resolution=resolution)
# Get the source distribution. If the source is uniform, onsky is None.
onsky = get_source_distribution(args.fwhm, args.uniform, args.sersic)
# Show the rendered source
# if onsky is not None:
# pyplot.imshow(onsky.data, origin='lower', interpolation='nearest')
# pyplot.show()
# Get the sky spectrum
sky_spectrum = get_sky_spectrum(args.sky_mag,
mag_band=args.sky_mag_band,
mag_system=args.sky_mag_system)
# Overplot the source and sky spectrum
# ax = spec.plot()
# ax = sky_spectrum.plot(ax=ax, show=True)
# Get the atmospheric throughput
atmospheric_throughput = efficiency.AtmosphericThroughput(
airmass=args.airmass)
# Set the telescope. Defines the aperture area and throughput
# (nominally 3 aluminum reflections for Keck)
telescope = telescopes.KeckTelescope()
# Define the observing aperture; fiber diameter is in arcseconds,
# center is 0,0 to put the fiber on the target center. "resolution"
# sets the resolution of the fiber rendering; it has nothing to do
# with spatial or spectral resolution of the instrument
fiber = aperture.FiberAperture(0, 0, fiber_diameter, resolution=100)
# Get the spectrograph throughput (circa June 2018; TODO: needs to
# be updated). Includes fibers + foreoptics + FRD + spectrograph +
# detector QE (not sure about ADC). Because this is the total
# throughput, define a generic efficiency object.
thru_db = numpy.genfromtxt(
os.path.join(os.environ['ENYO_DIR'], 'data/efficiency',
'fobos_throughput.db'))
spectrograph_throughput = efficiency.Efficiency(thru_db[:, 1],
wave=thru_db[:, 0])
# System efficiency combines the spectrograph and the telescope
system_throughput = efficiency.SystemThroughput(
wave=spec.wave,
spectrograph=spectrograph_throughput,
telescope=telescope.throughput)
# Instantiate the detector; really just a container for the rn and
# dark current for now. QE is included in fobos_throughput.db file,
# so I set it to 1 here.
det = detector.Detector(rn=rn, dark=dark, qe=1.0)
# Extraction: makes simple assumptions about the detector PSF for
# each fiber spectrum and mimics a "perfect" extraction, including
# an assumption of no cross-talk between fibers. Ignore the
# "spectral extraction".
extraction = extract.Extraction(det,
spatial_fwhm=spatial_fwhm,
spatial_width=1.5 * spatial_fwhm,
spectral_fwhm=spectral_fwhm,
spectral_width=spectral_fwhm)
# Perform the observation
obs = Observation(telescope,
sky_spectrum,
fiber,
args.time,
det,
system_throughput=system_throughput,
atmospheric_throughput=atmospheric_throughput,
airmass=args.airmass,
onsky_source_distribution=onsky,
source_spectrum=spec,
extraction=extraction,
snr_units=args.snr_units)
# Construct the S/N spectrum
snr = obs.snr(sky_sub=True, sky_err=args.sky_err)
if args.ipython:
embed()
snr_label = 'S/N per {0}'.format('R element' if args.snr_units ==
'resolution' else args.snr_units)
if args.plot:
w, h = pyplot.figaspect(1)
fig = pyplot.figure(figsize=(1.5 * w, 1.5 * h))
ax = fig.add_axes([0.1, 0.5, 0.8, 0.4])
ax.set_xlim([wave[0], wave[-1]])
ax.minorticks_on()
ax.tick_params(which='major',
length=8,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=4,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.8', zorder=0, linestyle='-')
ax.xaxis.set_major_formatter(ticker.NullFormatter())
ax.set_yscale('log')
ax = spec.plot(ax=ax, label='Object')
ax = sky_spectrum.plot(ax=ax, label='Sky')
ax.legend()
ax.text(-0.1,
0.5,
r'Flux [10$^{-17}$ erg/s/cm$^2$/${\rm \AA}$]',
ha='center',
va='center',
transform=ax.transAxes,
rotation='vertical')
ax = fig.add_axes([0.1, 0.1, 0.8, 0.4])
ax.set_xlim([wave[0], wave[-1]])
ax.minorticks_on()
ax.tick_params(which='major',
length=8,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=4,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.8', zorder=0, linestyle='-')
ax = snr.plot(ax=ax)
ax.text(0.5,
-0.1,
r'Wavelength [${\rm \AA}$]',
ha='center',
va='center',
transform=ax.transAxes)
ax.text(-0.1,
0.5,
snr_label,
ha='center',
va='center',
transform=ax.transAxes,
rotation='vertical')
pyplot.show()
# Report
g = efficiency.FilterResponse(band='g')
r = efficiency.FilterResponse(band='r')
iband = efficiency.FilterResponse(band='i')
print('-' * 70)
print('{0:^70}'.format('FOBOS S/N Calculation (v0.2)'))
print('-' * 70)
print('Compute time: {0} seconds'.format(time.perf_counter() - t))
print('Object g- and r-band AB magnitude: {0:.1f} {1:.1f}'.format(
spec.magnitude(band=g), spec.magnitude(band=r)))
print('Sky g- and r-band AB surface brightness: {0:.1f} {1:.1f}'.format(
sky_spectrum.magnitude(band=g), sky_spectrum.magnitude(band=r)))
print('Exposure time: {0:.1f} (s)'.format(args.time))
if not args.uniform:
print('Aperture Loss: {0:.1f}%'.format(
(1 - obs.aperture_factor) * 100))
print('Extraction Loss: {0:.1f}%'.format(
(1 - obs.extraction.spatial_efficiency) * 100))
print('Median {0}: {1:.1f}'.format(snr_label, numpy.median(snr.flux)))
print('g-band weighted mean {0} {1:.1f}'.format(
snr_label,
numpy.sum(g(snr.wave) * snr.flux) / numpy.sum(g(snr.wave))))
print('r-band weighted mean {0} {1:.1f}'.format(
snr_label,
numpy.sum(r(snr.wave) * snr.flux) / numpy.sum(r(snr.wave))))
print('i-band weighted mean {0} {1:.1f}'.format(
snr_label,
numpy.sum(iband(snr.wave) * snr.flux) / numpy.sum(iband(snr.wave))))
def main(args):
if args.sky_err < 0 or args.sky_err > 1:
raise ValueError(
'--sky_err option must provide a value between 0 and 1.')
t = time.perf_counter()
# Extract the slit properties for clarity
slit_x, slit_y, slit_width, slit_length, slit_rotation = args.slit
effective_slit_width = slit_width / numpy.cos(numpy.radians(slit_rotation))
_extract_length = args.fwhm if args.extract is None else args.extract
# TODO: The slit length is currently not used. Instead, the length
# of the slit is set to the extraction length. This is mostly just
# because of the current way the Observation class works.
# Slit aperture. This representation of the slit is *always*
# centered at (0,0). Set the aperture based on the extraction
# length for now.
slit = aperture.SlitAperture(0.,
0.,
slit_width,
_extract_length,
rotation=slit_rotation)
# Get the source distribution. If the source is uniform, onsky is None.
onsky = get_source_distribution(args.fwhm, args.uniform, args.sersic)
# Sky spectrum and atmospheric throughput
sky_spectrum = spectrum.MaunakeaSkySpectrum()
atmospheric_throughput = efficiency.AtmosphericThroughput(
airmass=args.airmass)
# Emission lines to add
emline_db = None if args.emline is None else read_emission_line_database(
args.emline)
# Setup the raw object spectrum
if args.spec_file is None:
wavelengths = [3100, 10000, 1e-5]
wave = get_wavelength_vector(*wavelengths)
obj_spectrum = spectrum.ABReferenceSpectrum(wave, log=True)
else:
obj_spectrum = read_spectrum(args.spec_file, args.spec_wave,
args.spec_wave_units, args.spec_flux,
args.spec_flux_units, args.spec_res_indx,
args.spec_res_value, args.spec_table)
#-------------------------------------------------------------------
#-------------------------------------------------------------------
# Setup the instrument arms
#-------------------------------------------------------------------
# Blue Arm
blue_arm = TMTWFOSBlue(reflectivity=args.refl,
grating=args.blue_grat,
cen_wave=args.blue_wave,
grating_angle=args.blue_angle)
# Pixels per resolution element
blue_res_pix = blue_arm.resolution_element(slit_width=effective_slit_width, units='pixels') \
/ args.blue_binning[0]
# Get the wavelength range for each arm
blue_wave_lim = blue_arm.wavelength_limits(slit_x,
slit_y,
add_grating_limits=True)
# Setup dummy wavelength vectors to get something appropriate for sampling
max_resolution = blue_arm.resolution(blue_wave_lim[1],
x=slit_x,
slit_width=effective_slit_width)
# Set the wavelength vector to allow for a regular, logarithmic binning
dw = 1 / blue_res_pix / max_resolution / numpy.log(10)
blue_wave = get_wavelength_vector(blue_wave_lim[0], blue_wave_lim[1], dw)
resolution = blue_arm.resolution(blue_wave,
x=slit_x,
slit_width=effective_slit_width)
blue_spec = observed_spectrum(obj_spectrum,
blue_wave,
resolution,
mag=args.mag,
mag_band=args.mag_band,
mag_system=args.mag_system,
redshift=args.redshift,
emline_db=emline_db)
# Resample to linear to better match what's expected for the detector
blue_ang_per_pix = blue_arm.resolution_element(
wave=blue_wave_lim, slit_width=effective_slit_width,
units='angstrom') / blue_res_pix
blue_wave = get_wavelength_vector(blue_wave_lim[0],
blue_wave_lim[1],
numpy.mean(blue_ang_per_pix),
linear=True)
blue_spec = blue_spec.resample(wave=blue_wave, log=False)
# Spectrograph arm efficiency (this doesn't include the telescope)
blue_arm_eff = blue_arm.efficiency(blue_spec.wave,
x=slit_x,
y=slit_y,
same_type=False)
# System efficiency combines the spectrograph and the telescope
blue_thru = efficiency.SystemThroughput(
wave=blue_spec.wave,
spectrograph=blue_arm_eff,
telescope=blue_arm.telescope.throughput)
# Extraction: makes simple assumptions about the monochromatic
# image and extracts the flux within the aperture, assuming the
# flux from both the object and sky is uniformly distributed across
# all detector pixels (incorrect!).
# Extraction width in pixels
spatial_width = slit.length * numpy.cos(numpy.radians(slit.rotation)) / blue_arm.pixelscale \
/ args.blue_binning[1]
blue_ext = extract.Extraction(blue_arm.det,
spatial_width=spatial_width,
profile='uniform')
# Perform the observation
blue_obs = Observation(blue_arm.telescope,
sky_spectrum,
slit,
args.time,
blue_arm.det,
system_throughput=blue_thru,
atmospheric_throughput=atmospheric_throughput,
airmass=args.airmass,
onsky_source_distribution=onsky,
source_spectrum=blue_spec,
extraction=blue_ext,
snr_units=args.snr_units)
# Construct the S/N spectrum
blue_snr = blue_obs.snr(sky_sub=True, sky_err=args.sky_err)
#-------------------------------------------------------------------
# Red Arm
red_arm = TMTWFOSRed(reflectivity=args.refl,
grating=args.red_grat,
cen_wave=args.red_wave,
grating_angle=args.red_angle)
# Pixels per resolution element
red_res_pix = red_arm.resolution_element(slit_width=effective_slit_width, units='pixels') \
/ args.red_binning[0]
# Get the wavelength range for each arm
red_wave_lim = red_arm.wavelength_limits(slit_x,
slit_y,
add_grating_limits=True)
# Setup dummy wavelength vectors to get something appropriate for sampling
max_resolution = red_arm.resolution(red_wave_lim[1],
x=slit_x,
slit_width=effective_slit_width)
# Set the wavelength vector to allow for a regular, logarithmic binning
dw = 1 / red_res_pix / max_resolution / numpy.log(10)
red_wave = get_wavelength_vector(red_wave_lim[0], red_wave_lim[1], dw)
resolution = red_arm.resolution(red_wave,
x=slit_x,
slit_width=effective_slit_width)
red_spec = observed_spectrum(obj_spectrum,
red_wave,
resolution,
mag=args.mag,
mag_band=args.mag_band,
mag_system=args.mag_system,
redshift=args.redshift,
emline_db=emline_db)
# Resample to linear to better match what's expected for the detector
red_ang_per_pix = red_arm.resolution_element(
wave=red_wave_lim, slit_width=effective_slit_width,
units='angstrom') / red_res_pix
red_wave = get_wavelength_vector(red_wave_lim[0],
red_wave_lim[1],
numpy.mean(red_ang_per_pix),
linear=True)
ree_spec = red_spec.resample(wave=red_wave, log=False)
# Spectrograph arm efficiency (this doesn't include the telescope)
red_arm_eff = red_arm.efficiency(red_spec.wave,
x=slit_x,
y=slit_y,
same_type=False)
# System efficiency combines the spectrograph and the telescope
red_thru = efficiency.SystemThroughput(
wave=red_spec.wave,
spectrograph=red_arm_eff,
telescope=red_arm.telescope.throughput)
# Extraction: makes simple assumptions about the monochromatic
# image and extracts the flux within the aperture, assuming the
# flux from both the object and sky is uniformly distributed across
# all detector pixels (incorrect!).
# Extraction width in pixels
spatial_width = slit.length * numpy.cos(numpy.radians(slit.rotation)) / red_arm.pixelscale \
/ args.red_binning[1]
red_ext = extract.Extraction(red_arm.det,
spatial_width=spatial_width,
profile='uniform')
# Perform the observation
red_obs = Observation(red_arm.telescope,
sky_spectrum,
slit,
args.time,
red_arm.det,
system_throughput=red_thru,
atmospheric_throughput=atmospheric_throughput,
airmass=args.airmass,
onsky_source_distribution=onsky,
source_spectrum=red_spec,
extraction=red_ext,
snr_units=args.snr_units)
# Construct the S/N spectrum
red_snr = red_obs.snr(sky_sub=True, sky_err=args.sky_err)
# Set the wavelength vector
dw = 1 / (5 if red_res_pix > 5 else
red_res_pix) / max_resolution / numpy.log(10)
red_wave = get_wavelength_vector(red_wave_lim[0], red_wave_lim[1], dw)
resolution = red_arm.resolution(red_wave,
x=slit_x,
slit_width=effective_slit_width)
red_spec = observed_spectrum(obj_spectrum,
red_wave,
resolution,
mag=args.mag,
mag_band=args.mag_band,
mag_system=args.mag_system,
redshift=args.redshift,
emline_db=emline_db)
#-------------------------------------------------------------------
#-------------------------------------------------------------------
snr_label = 'S/N per {0}'.format('R element' if args.snr_units ==
'resolution' else args.snr_units)
# Report
g = efficiency.FilterResponse(band='g')
r = efficiency.FilterResponse(band='r')
# iband = efficiency.FilterResponse(band='i')
print('-' * 70)
print('{0:^70}'.format('WFOS S/N Calculation (v0.1)'))
print('-' * 70)
print('Compute time: {0} seconds'.format(time.perf_counter() - t))
print('Object g- and r-band AB magnitude: {0:.1f} {1:.1f}'.format(
obj_spectrum.magnitude(band=g), obj_spectrum.magnitude(band=r)))
print('Sky g- and r-band AB surface brightness: {0:.1f} {1:.1f}'.format(
sky_spectrum.magnitude(band=g), sky_spectrum.magnitude(band=r)))
print('Exposure time: {0:.1f} (s)'.format(args.time))
if not args.uniform:
print('Aperture Loss: {0:.1f}%'.format(
(1 - red_obs.aperture_factor) * 100))
# print('Extraction Loss: {0:.1f}%'.format((1-obs.extraction.spatial_efficiency)*100))
# print('Median {0}: {1:.1f}'.format(snr_label, numpy.median(snr.flux)))
# print('g-band weighted mean {0} {1:.1f}'.format(snr_label,
# numpy.sum(g(snr.wave)*snr.flux)/numpy.sum(g(snr.wave))))
# print('r-band weighted mean {0} {1:.1f}'.format(snr_label,
# numpy.sum(r(snr.wave)*snr.flux)/numpy.sum(r(snr.wave))))
# print('i-band weighted mean {0} {1:.1f}'.format(snr_label,
# numpy.sum(iband(snr.wave)*snr.flux)/numpy.sum(iband(snr.wave))))
if args.plot:
w, h = pyplot.figaspect(1)
fig = pyplot.figure(figsize=(1.5 * w, 1.5 * h))
ax = fig.add_axes([0.1, 0.5, 0.8, 0.4])
ax.set_xlim([obj_spectrum.wave[0], obj_spectrum.wave[-1]])
ax.minorticks_on()
ax.tick_params(which='major',
length=8,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=4,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.8', zorder=0, linestyle='-')
ax.xaxis.set_major_formatter(ticker.NullFormatter())
ax.set_yscale('log')
ax = obj_spectrum.plot(ax=ax, label='Object', color='k', lw=1)
ax = sky_spectrum.plot(ax=ax, label='Sky', color='0.5', lw=0.5)
ax.legend()
ax.text(-0.1,
0.5,
r'Flux [10$^{-17}$ erg/s/cm$^2$/${\rm \AA}$]',
ha='center',
va='center',
transform=ax.transAxes,
rotation='vertical')
ax = fig.add_axes([0.1, 0.1, 0.8, 0.4])
ax.set_xlim([obj_spectrum.wave[0], obj_spectrum.wave[-1]])
ax.minorticks_on()
ax.tick_params(which='major',
length=8,
direction='in',
top=True,
right=True)
ax.tick_params(which='minor',
length=4,
direction='in',
top=True,
right=True)
ax.grid(True, which='major', color='0.8', zorder=0, linestyle='-')
ax = blue_snr.plot(ax=ax, color='C0', label='Blue Arm')
ax = red_snr.plot(ax=ax, color='C3', label='Red Arm')
ax.text(0.5,
-0.1,
r'Wavelength [${\rm \AA}$]',
ha='center',
va='center',
transform=ax.transAxes)
ax.text(-0.1,
0.5,
snr_label,
ha='center',
va='center',
transform=ax.transAxes,
rotation='vertical')
pyplot.show()
if args.ipython:
embed()
def observed_spectrum(spec,
wave,
resolution,
mag=None,
mag_band='g',
mag_system='AB',
redshift=None,
emline_db=None):
"""
Convert input spectrum to expected (noise-free) observation.
Operations in order:
- Redshifts spectrum, if redshift provided
- Rescales magnitude, if mag provided
- Matches the spectral resolution, if the input spectrum as a defined resolution vector
- Matches the sampling to the input wavelength vector
- Add emission lines, if provided
"""
if redshift is not None:
spec.redshift(redshift)
if mag is not None:
broadband = efficiency.FilterResponse(band=mag_band)
# Check that the magnitude can be calculated
indx = (broadband.wave < spec.wave[0]) & (broadband.eta > 0)
if numpy.any(indx):
raise ValueError(
'Input spectrum (after applying any redshift) does not fully '
'overlap selected broad-band filter. Use a different band or '
'different spectrum to rescale to the given magnitude.')
spec.rescale_magnitude(mag, band=broadband, system=mag_system)
_resolution = set_resolution(wave, resolution)
# Force the spectrum to be regularly sampled on a logarithmic grid
if not spec.regular:
print('Imposing uniform logarithmic sampling')
# TODO: I'm not sure that this has to be logarithmic.
spec = spec.resample(log=True)
# If the resolution is available match it to the resolution
# expected for the instrument
if spec.sres is not None:
new_sres = interpolate.interp1d(wave,
_resolution,
fill_value=(_resolution[0],
_resolution[-1]),
bounds_error=False)(spec.wave)
indx = spec.sres < new_sres
# TODO: set some tolerance (i.e., some fraction of the spectral range)
if numpy.any(indx):
warnings.warn(
'Spectral resolution of input spectrum is lower than what will be '
'provided by the instrument over {0:.1f}% of the spectral range.'
.format(numpy.sum(indx) / indx.size))
print(
'Convolving to delivered spectral resolution (as best as possible).'
)
spec = spec.match_resolution(_resolution, wave=wave)
else:
spec.sres = interpolate.interp1d(wave,
_resolution,
fill_value=(_resolution[0],
_resolution[-1]),
bounds_error=False)(spec.wave)
# Down-sample to the provided wavelength vector
print('Resampling to the provided wavelength sampling.')
spec = spec.resample(wave=wave, log=True)
if emline_db is None:
return spec
warnings.warn(
'Adding emission lines will change the magnitude of the object.')
return spectrum.EmissionLineSpectrum(spec.wave,
emline_db['flux'],
emline_db['restwave'],
emline_db['fwhm'],
units=emline_db['fwhmu'],
redshift=redshift,
resolution=spec.sres,
log=True,
continuum=spec.flux)
def onsky_aperture_snr(telescope, mag, seeing, on_sky_fiber_diameter, dmag_sky=None,
detector_noise_ratio=1., sampling=0.1, size=5.0, re=None, sersicn=None,
exptime=1., quiet=False):
# Use a reference spectrum that's constant; units are 1e-17 erg/s/cm^2/angstrom
wave = numpy.linspace(3000., 10000., num=7001)
spec = spectrum.ABReferenceSpectrum(wave)
g = efficiency.FilterResponse()
spec.rescale_magnitude(mag, band=g)
# Sky Spectrum; units are 1e-17 erg/s/cm^2/angstrom/arcsec^2
sky = spectrum.MaunakeaSkySpectrum()
sky_mag = sky.magnitude(g)
if dmag_sky is not None:
sky_mag += dmag_sky
sky.rescale_magnitude(sky_mag, band=g)
# # For the image representation of the fiber and source, use a fixed
# # sampling
# size = (int(numpy.ceil(on_sky_fiber_diameter*1.2/sampling))+1)*sampling
# Build the source
intrinsic = 1.0 if re is None or sersicn is None \
else source.OnSkySersic(1.0, re, sersicn, sampling=sampling, size=size,
unity_integral=True)
src = source.OnSkySource(seeing, intrinsic, sampling=sampling, size=size)
if numpy.absolute(numpy.log10(numpy.sum(src.data*numpy.square(src.sampling)))) > 0.1:
raise ValueError('Bad source representation; image integral is {0:.3f}.'.format(
numpy.sum(src.data*numpy.square(src.sampling))))
# Define fiber aperture
fiber = aperture.FiberAperture(0., 0., on_sky_fiber_diameter, resolution=100)
# Generate its response function
fiber_response = fiber.response(src.x, src.y)
in_fiber = numpy.sum(src.data*fiber_response)*numpy.square(src.sampling)
# Scale the fiber response profile to produce a uniformly scrambled
# fiber output beam
scale = numpy.sum(src.data*fiber_response)/numpy.sum(fiber_response)
source_fiber_img = scale*fiber_response
# Convert them to photons/angstrom (per arcsec^2 for sky)
spec.rescale(telescope.area*exptime)
sky.rescale(telescope.area*exptime)
spec.photon_flux()
sky.photon_flux()
# Get the total number of source and sky photons at
# the detector integrated over the g-band filter
flux = numpy.sum(spec.flux * g(spec.wave) * spec.wavelength_step())
sky_flux = numpy.sum(sky.flux * g(sky.wave) * sky.wavelength_step())
# Scale the source image by the expected flux (source_fiber_img was
# constructed assuming unity flux)
fiber_obj_img = source_fiber_img * flux
# Scale the fiber response function by the sky surface brightness
# (the integral of the sky image is then just the fiber area times
# the uniform sky surface brightness)
fiber_sky_img = fiber_response * sky_flux
# Integrate spatially over the pixel size to get the number of
# photons/s/cm^2 entering the fiber
fiber_obj_flux = numpy.sum(fiber_obj_img * numpy.square(src.sampling))
fiber_sky_flux = numpy.sum(fiber_sky_img * numpy.square(src.sampling))
total_flux = fiber_obj_flux + fiber_sky_flux
sky_var = fiber_sky_flux + detector_noise_ratio*total_flux
total_var = fiber_obj_flux + sky_var
total_snr = fiber_obj_flux/numpy.sqrt(total_var)
skysub_snr = fiber_obj_flux/numpy.sqrt(total_var + sky_var)
if not quiet:
print('Star Magnitude (AB mag): {0:.2f}'.format(spec.magnitude(g)))
print('Sky Surface Brightness (AB mag/arcsec^2): {0:.2f}'.format(sky_mag))
print('On-sky fiber diameter (arcsec): {0:.2f}'.format(on_sky_fiber_diameter))
print('Pixel sampling of maps: {0:.3f} (arcsec/pixel)'.format(sampling))
print('Square map size : {0:.3f} (arcsec)'.format(size))
print('Fraction of source flux in mapped image: {0:.3f}'.format(numpy.sum(src.data)
* numpy.square(sampling)))
print('Fiber area (mapped): {0:.2f} (arcsec^2)'.format(numpy.sum(fiber_response)
* numpy.square(src.sampling)))
print('Fiber area (nominal): {0:.2f} (arcsec^2)'.format(fiber.area))
print('Aperture loss: {0:.3f}'.format(in_fiber))
print('Object flux: {0:.3e} (g-band photons/s)'.format(fiber_obj_flux))
print('Sky flux: {0:.3e} (g-band photons/s)'.format(fiber_sky_flux))
print('Total S/N: {0:.3f}'.format(total_snr))
print('Sky-subtracted S/N: {0:.3f}'.format(skysub_snr))
# return fiber_obj_flux, fiber_sky_flux, total_snr, skysub_snr
return total_snr, skysub_snr