def test_jplace_read(self):
jplace_fname = os.path.join(self.testfile_dir, "test.jplace")
parser = EpaJsonParser(jplace_fname)
self.assertEqual(parser.get_raxml_version(), "8.2.3")
t = Tree(parser.get_tree())
t_len = len(t)
self.assertEqual(t_len, 32)
self.assertEqual(len(parser.get_placement()), 6)
for p in parser.get_placement():
self.assertFalse(p["n"][0] in t)
self.assertTrue(len(p["p"]) > 0)
for edge in p["p"]:
branch = int(edge[0])
lh = edge[1]
lhw = edge[2]
self.assertTrue(branch >= 0 and branch < (t_len * 2 - 3))
self.assertTrue(lhw >= 0.0 and lhw <= 1.0)
def test_jplace_read(self):
jplace_fname = os.path.join(self.testfile_dir, "test.jplace")
parser = EpaJsonParser(jplace_fname)
self.assertEquals(parser.get_raxml_version(), "8.2.3")
t = Tree(parser.get_tree())
t_len = len(t)
self.assertEquals(t_len, 32)
self.assertEquals(len(parser.get_placement()), 6)
for p in parser.get_placement():
self.assertFalse(p["n"][0] in t)
self.assertTrue(len(p["p"]) > 0)
for edge in p["p"]:
branch = int(edge[0])
lh = edge[1]
lhw = edge[2]
self.assertTrue(branch >= 0 and branch < (t_len * 2 - 3))
self.assertTrue(lhw >= 0.0 and lhw <= 1.0)
